# An R interface for computational modeling of tumor progression

## Documentation for package ‘CancerInSilico’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

CancerInSilico-package | CancerInSilico
CancerInSilico | CancerInSilico
CellModel-class | CellModel
getAxisAngle | 'getAxisAngle' get the axis angle of each cell
getAxisLength | 'getAxisLength' get the axis length of each cell
getCoordinates | 'getCoordinates' get a two dimensional matrix of all the cell coordinates
getCycleLengths | 'getCycleLengths' return the cycle lengths of each cells at time
getDensity | 'getDensity' gets the density of cells at a given time
getGrowthRates | 'getGrowthRates' get the model growth rates of each cell
getNumberOfCells | 'getNumberOfCells' get the number of cells alive
getParameters | 'getParameters' get a named list of parameters in the model
getRadii | 'getRadii' get the radius of each cell
interactivePlot | 'interactivePlot' plots a CellModel and allows the user to control the plot with various commands
plotCells | 'plotCell' plots a CellModel at a given time
runCancerSim | 'runCancerSim' runs a cell-based model of cancer
runDrasdoHohme | 'runDrasdoHohme' runs the model based on Drasdo and Hohme (2003)
show-method | 'show' display summary of CellModel class
timeToRow | 'timeToRow' return the correct row in the mCells list corresponding to a given time