Package: CNPBayes
Type: Package
Title: Bayesian mixture models for copy number polymorphisms
Version: 1.4.0
Maintainer: Jacob Carey <jcarey15@jhu.edu>
Description: Bayesian hierarchical mixture models for batch effects and copy
    number.
Date: Tue Jan 20 20:41:00 EST 2015
Author: Stephen Cristiano, Robert Scharpf, and Jacob Carey
Depends: GenomicRanges
Imports: Rcpp (>= 0.12.1), S4Vectors (>= 0.9.25), matrixStats,
        RColorBrewer, gtools, combinat, IRanges, GenomeInfoDb,
        GenomicRanges, methods, BiocGenerics, graphics, stats, coda,
        SummarizedExperiment
Suggests: testthat, knitr, BiocStyle, VanillaICE (>= 1.31.3),
        BiocCheck, MASS, oligoClasses, dplyr, tidyr, ggplot2
Collate: 'help.R' 'AllGenerics.R' 'AllClasses.R' 'RcppExports.R'
        'data.R' 'functions.R' 'marginal_likelihood.R'
        'methods-BatchModel.R' 'methods-DensityModel.R'
        'methods-Hyperparameters.R' 'methods-MarginalModel.R'
        'methods-McmcChains.R' 'methods-McmcParams.R'
        'methods-MixtureModel.R' 'methods-SummarizedExperiment.R'
        'model_initialization.R' 'relabeling.R' 'simulate_data.R'
        'visualization.R'
VignetteBuilder: knitr
License: Artistic-2.0
LinkingTo: Rcpp
biocViews: CopyNumberVariation, Bayesian
Roxygen: list(wrap=FALSE)
LazyData: TRUE
URL: https://github.com/scristia/CNPBayes
BugReports: https://github.com/scristia/CNPBayes/issues
NeedsCompilation: yes
RoxygenNote: 5.0.1
Packaged: 2016-10-18 00:31:23 UTC; biocbuild
Built: R 3.3.1; i386-w64-mingw32; 2016-10-18 01:42:32 UTC; windows
Archs: i386, x64
