Package: CNEr
Version: 1.10.2
Date: 2016-10-25
Title: CNE Detection and Visualization
Description: Large-scale identification and advanced visualization 
             of sets of conserved noncoding elements.
Author: Ge Tan <ge.tan09@imperial.ac.uk>
Maintainer: Ge Tan <ge.tan09@imperial.ac.uk>
Imports: Biostrings (>= 2.33.4), RSQLite (>= 0.11.4), GenomeInfoDb (>=
        1.1.3), GenomicRanges (>= 1.23.16), rtracklayer (>= 1.25.5),
        XVector (>= 0.5.4), GenomicAlignments (>= 1.1.9), methods,
        S4Vectors (>= 0.9.25), IRanges (>= 2.5.27), readr (>= 0.2.2),
        BiocGenerics, tools, parallel, reshape2 (>= 1.4.1), ggplot2 (>=
        2.1.0), poweRlaw (>= 0.60.3), annotate (>= 1.50.0), GO.db (>=
        3.3.0), R.utils (>= 2.3.0), KEGGREST (>= 1.14.0)
Depends: R (>= 3.2.2)
Suggests: Gviz (>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat,
        BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38,
        TxDb.Drerio.UCSC.danRer10.refGene, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Ggallus.UCSC.galGal3
LinkingTo: S4Vectors, IRanges, XVector
VignetteBuilder: knitr
License: GPL-2 | file LICENSE
License_restricts_use: yes
URL: https://github.com/ge11232002/CNEr
BugReports: https://github.com/ge11232002/CNEr/issues
Type: Package
biocViews: GeneRegulation, Visualization, DataImport
NeedsCompilation: yes
LazyData: no
Collate: GRangePairs-class.R GRangePairs-methods.R Axt-class.R
        CNE-class.R utils.R ceScan.R plot.R makeGeneDbFromUCSC.R
        IO-methods.R scoringMatrix.R subAxt-methods.R Axt-methods.R
        DB.R AssemblyStats.R GRB.R WholeGenomeAlignment.R Ancora.R
        CNE-methods.R GO.R KEGG.R
Packaged: 2017-03-18 02:40:20 UTC; biocbuild
Built: R 3.3.3; i386-w64-mingw32; 2017-03-18 04:34:59 UTC; windows
Archs: i386, x64
