BiGGR-package           Creates an interface to the BiGG database,
                        provides a framework for simulation and
                        produces flux graphs
E.coli_iAF1260          Ecoli dataset with ORFs and thermodynamic
                        information
E.coli_iJR904           Ecoli genome-scale model
E.coli_textbook         Ecoli dataset from the BiGG database
Glycolysis              Metabolic reconstruction of Glycolysis pathway
H.pylori_ilT341         H.pylori in silico genome-scale
                        characterization of single and double deletion
                        mutants
H.sapiens_Recon_1       Reconstruction of human metabolism from the
                        BiGG database
M.barkeri_iAF692        Metabolic reconstruction of M.barkeri from the
                        BiGG database
M.tuberculosis_iNJ661   Metabolic reconstruction of M.tuberculosis from
                        the BiGG database
P.putida_iJN746         Metabolic reconstruction of P.putida from the
                        BiGG database
Recon2                  Human metabolic reconstruction Recon2
S.aureus_iSB619         Metabolic reconstruction of S.aureus from the
                        BiGG database
S.cerevisiae_iND750     Metabolic reconstruction of S.cerevisiae from
                        the BiGG database
buildSBMLFromBiGG       Build an SBML model from a given reactions file
                        obtained from the BiGG database
buildSBMLFromGenes      Build an SBML model for specific genes in a
                        given database
buildSBMLFromPathways   Build an SBML model for specific pathway(s) in
                        a given database
buildSBMLFromReactionIDs
                        Build an SBML model for specific reactions in a
                        given database
createLIMFromBiGG       Create a LIM model object from a BiGG database
                        file
createLIMFromSBML       Create a LIM model object from an SBML file
extractGeneAssociations
                        Extract informations on genes from a given
                        database
extractPathways         Extract all pathways from given database
getPathwaysForSBML      Extract all pathways from a database that are
                        relevant for a given SBML model
getRates                Get Optimized Rates
gprMapping              GPR mapping
gprMappingAvg           GPR mapping ignoring AND & OR operators
lying.tunell.data       Dataset of in vivo cerebral metabolite uptake
                        and release rates in healthy humans (old
                        subjects)
rmvSpliceVariant        Remove splicing variants from the database.
sampleFluxEnsemble      Sample a posterior ensemble of feasible flux
                        configurations within the precision limits of
                        given fluxes.
sbml2hyperdraw          Returns a graph representation of an SBML model
