ASpli-package           Analysis of alternative splicing using RNAseq
ASpliAS-class           Class '"ASpliAS"'
ASpliCounts             Class '"ASpliCounts"'
ASpliCounts-class       Class '"ASpliCounts"'
ASpliDU-class           Class '"ASpliDU"'
ASpliFeatures-class     Class '"ASpliFeatures"'
AsDiscover              Report PSI and PIR using experimental junctions
DUreport                Differential gene expression and differential
                        bin/junction usage estimation
DUreport_DEXSeq         Differential gene expression and differential
                        bin/junction usage estimation
altPSI                  Accessors for ASpliAS object
binGenome               Feature coordinates extraction
binGenome-methods       Feature coordinates extraction
countsb                 Accessors for ASpliCounts object
featuresb               Accessors for ASpliFeatures object
genesDE                 Accessors for ASpliDU object
loadBAM                 Load BAM files
plotTopTags             Coverage plots
rds                     Divides read counts by gene and bin length
readCounts              Summarize read overlaps
show-methods            Display a summary of data contained in
                        ASpliObjects
writeRds                Write results
writeRds-methods        Write results
