Adaptive Signature Selection and InteGratioN (ASSIGN)

Documentation for package ‘ASSIGN’ version 1.10.0

assign.convergence	Check the convergence of the MCMC chain
assign.cv.output	Cross validation output
assign.mcmc	The Gibbs sampling algorithm to approximate the joint distribution of the model parameters
assign.output	Prediction/validation output for test data
assign.preprocess	Input data preprocessing
assign.summary	Summary of the model parameters estimated by the Gibbs sampling algorithm
assign.wrapper	ASSIGN All-in-one function
geneList1	Pathway signature gene sets
testData1	Gene expression profiling from cancer patients (test dataset)
trainingData1	Gene expression profiling from cell line preturbation experiments (training dataset)