Package: ASAFE
Type: Package
Title: Ancestry Specific Allele Frequency Estimation
Version: 1.0.0
Date: 2016-04-24
Author: Qian Zhang <qszhang@uw.edu>
Maintainer: Qian Zhang <qszhang@uw.edu>
Description: Given admixed individuals' bi-allelic SNP genotypes and
        ancestry pairs (where each ancestry can take one of three
        values) for multiple SNPs, perform an EM algorithm to deal with
        the fact that SNP genotypes are unphased with respect to
        ancestry pairs, in order to estimate ancestry-specific allele
        frequencies for all SNPs.
License: Artistic-2.0
biocViews: SNP, GenomeWideAssociation, LinkageDisequilibrium,
        BiomedicalInformatics, Genetics, ExperimentalDesign
LazyData: TRUE
Suggests: knitr, testthat
VignetteBuilder: knitr
Collate: estep.R nudge.R mstep.R increment_n.R em.R algorithm_1snp.R
        algorithm_1snp_wrapper.R get_mean_sd_error_anc_bin.R
        get_mean_sd_error_anc.R change_ancestry.R
        draw_allele_given_anc.R get_errors_1_scenario.R
        get_errors_summary_stats_1_scenario.R get_results_error.R
        get_scenario_errors.R get_true_freqs_1snp.R sample_ancestry.R
NeedsCompilation: no
Depends: R (>= 3.2)
Packaged: 2016-10-18 00:37:30 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 01:07:12 UTC; windows
