metaseqR-package	metaseqR-package
as.class.vector	as.class.vector
build.export	build.export
calc.f1score	calc.f1score
calc.otr	calc.otr
cddat	cddat
cdplot	cdplot
check.contrast.format	check.contrast.format
check.file.args	check.file.args
check.graphics.file	check.graphics.file
check.graphics.type	check.graphics.type
check.libsize	check.libsize
check.main.args	check.main.args
check.num.args	check.num.args
check.packages	check.packages
check.parallel	check.parallel
check.text.args	check.text.args
combine.bonferroni	combine.bonferroni
combine.maxp	combine.maxp
combine.minp	combine.minp
combine.simes	combine.simes
combine.weight	combine.weight
construct.gene.model	construct.gene.model
diagplot.avg.ftd	diagplot.avg.ftd
diagplot.boxplot	diagplot.boxplot
diagplot.cor	diagplot.cor
diagplot.de.heatmap	diagplot.de.heatmap
diagplot.edaseq	diagplot.edaseq
diagplot.filtered	diagplot.filtered
diagplot.ftd	diagplot.ftd
diagplot.mds	diagplot.mds
diagplot.metaseqr	diagplot.metaseqr
diagplot.noiseq	diagplot.noiseq
diagplot.noiseq.saturation	diagplot.noiseq.saturation
diagplot.pairs	diagplot.pairs
diagplot.roc	diagplot.roc
diagplot.venn	diagplot.venn
diagplot.volcano	diagplot.volcano
disp	disp
downsample.counts	downsample.counts
estimate.aufc.weights	estimate.aufc.weights
estimate.sim.params	estimate.sim.params
filter.exons	filter.exons
filter.genes	filter.genes
filter.high	filter.high
filter.low	filter.low
fisher.method	fisher.method
fisher.method.perm	fisher.method.perm
fisher.sum	fisher.sum
get.annotation	get.annotation
get.arg	get.arg
get.biotypes	get.biotypes
get.bs.organism	get.bs.organism
get.dataset	get.dataset
get.defaults	get.defaults
get.ensembl.annotation	get.ensembl.annotation
get.exon.attributes	get.exon.attributes
get.gc.content	get.gc.content
get.gene.attributes	get.gene.attributes
get.host	get.host
get.preset.opts	get.preset.opts
get.strict.biofilter	get.strict.biofilter
get.ucsc.annotation	get.ucsc.annotation
get.ucsc.credentials	get.ucsc.credentials
get.ucsc.dbl	get.ucsc.dbl
get.ucsc.organism	get.ucsc.organism
get.ucsc.query	get.ucsc.query
get.ucsc.tabledef	get.ucsc.tabledef
get.ucsc.tbl.tpl	get.ucsc.tbl.tpl
get.valid.chrs	get.valid.chrs
get.weights	get.weights
graphics.close	graphics.close
graphics.open	graphics.open
hg19.exon.counts	hg19.exon.counts
libsize.list.hg19	libsize.list.hg19
libsize.list.mm9	libsize.list.mm9
load.bs.genome	load.bs.genome
log2disp	log2disp
make.avg.expression	make.avg.expression
make.contrast.list	make.contrast.list
make.export.list	make.export.list
make.fold.change	make.fold.change
make.grid	make.grid
make.highcharts.points	make.highcharts.points
make.html.body	make.html.body
make.html.cells	make.html.cells
make.html.header	make.html.header
make.html.rows	make.html.rows
make.html.table	make.html.table
make.matrix	make.matrix
make.path.struct	make.path.struct
make.permutation	make.permutation
make.project.path	make.project.path
make.report.messages	make.report.messages
make.sample.list	make.sample.list
make.sim.data.sd	make.sim.data.sd
make.sim.data.tcc	make.sim.data.tcc
make.stat	make.stat
make.transformation	make.transformation
make.venn.areas	make.venn.areas
make.venn.colorscheme	make.venn.colorscheme
make.venn.counts	make.venn.counts
make.venn.pairs	make.venn.pairs
meta.perm	meta.perm
meta.test	meta.test
meta.worker	meta.worker
metaseqR	metaseqR-package
metaseqr	metaseqr
metaseqr.main	metaseqr
mlfo	mlfo
mm9.gene.counts	mm9.gene.counts
nat2log	nat2log
normalize.deseq	normalize.deseq
normalize.edaseq	normalize.edaseq
normalize.edger	normalize.edger
normalize.nbpseq	normalize.nbpseq
normalize.noiseq	normalize.noiseq
read.targets	read.targets
read2count	read2count
reduce.exons	reduce.exons
reduce.gene.data	reduce.gene.data
sample.list.hg19	sample.list.hg19
sample.list.mm9	sample.list.mm9
set.arg	set.arg
stat.bayseq	stat.bayseq
stat.deseq	stat.deseq
stat.edger	stat.edger
stat.limma	stat.limma
stat.nbpseq	stat.nbpseq
stat.noiseq	stat.noiseq
validate.alg.args	validate.alg.args
validate.list.args	validate.list.args
wapply	wapply
wp.adjust	wp.adjust
