derfinder-package	derfinder-package
advancedArg	derfinder-deprecated
analyzeChr	analyzeChr
annotateRegions	annotateRegions
calculatePvalues	calculatePvalues
calculateStats	calculateStats
coerceGR	coerceGR
collapseFullCoverage	collapseFullCoverage
coverageToExon	coverageToExon
createBw	createBw
createBwSample	createBwSample
define_cluster	define_cluster
derfinder-deprecated	derfinder-deprecated
extendedMapSeqlevels	extendedMapSeqlevels
filterData	filterData
findRegions	findRegions
fullCoverage	fullCoverage
genomeData	genomeData
genomeDataRaw	genomeDataRaw
genomeFstats	genomeFstats
genomeInfo	genomeInfo
genomeRegions	genomeRegions
genomicState	genomicState
getRegionCoverage	getRegionCoverage
getTotalMapped	getTotalMapped
loadCoverage	loadCoverage
makeGenomicState	makeGenomicState
makeModels	makeModels
mergeResults	mergeResults
preprocessCoverage	preprocessCoverage
railMatrix	railMatrix
rawFiles	rawFiles
regionMatrix	regionMatrix
sampleDepth	sampleDepth
