Package: MutationalPatterns
Type: Package
Title: Studying patterns in base substitution catalogues
Description: An extensive toolset for the characterization and visualization
    of a wide range of mutational patterns in base substitution data.
Version: 1.0.0
Date: 2016-08-24
Author: Francis Blokzijl, Roel Janssen, Ruben van Boxtel, Edwin Cuppen
Maintainer: Francis Blokzijl <F.Blokzijl@umcutrecht.nl>,
 Roel Janssen <R.R.E.Janssen-10@umcutrecht.nl>
License: MIT + file LICENSE
URL: https://github.com/CuppenResearch/MutationalPatterns
Imports: stats, BiocGenerics (>= 0.18.0), VariantAnnotation (>=
        1.18.1), reshape2 (>= 1.4.1), plyr (>= 1.8.3), ggplot2 (>=
        2.1.0), pracma (>= 1.8.8), SummarizedExperiment (>= 1.2.2),
        IRanges (>= 2.6.0), GenomeInfoDb (>= 1.8.1), Biostrings (>=
        2.40.0), gridExtra (>= 2.2.1)
Depends: R (>= 3.3.0), NMF (>= 0.20.6), GenomicRanges (>= 1.24.0)
Suggests: BSgenome (>= 1.40.0), BiocStyle (>= 2.0.3), biomaRt (>=
        2.28.0), BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0),
        TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2), rtracklayer (>=
        1.32.2)
biocViews: Genetics, SomaticMutation
ZipData: NA
LazyData: false
RoxygenNote: 5.0.1
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2016-10-18 05:07:58 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 18:30:06 UTC; unix
