# Michaelis-Menten Modelling of Dropouts in single-cell RNASeq

## Documentation for package ‘M3Drop’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bg__fit_logistic | Fit functions to the dropouts vs expression distribution.
bg__fit_MM | Fit functions to the dropouts vs expression distribution.
bg__fit_ZIFA | Fit functions to the dropouts vs expression distribution.
BrenneckeGetVariableGenes | Identify Highly Variable Genes
M3DropCleanData | Filter Expression Data
M3DropDifferentialExpression | Differentially Expressed Genes.
M3DropDropoutModels | Fit functions to the dropouts vs expression distribution.
M3DropExpressionHeatmap | Plot Heatmap of Gene Expression
M3DropGetExtremes | Get outliers from MM curve.
M3DropGetHeatmapCellClusters | Extracts cell clusters from heatmap output
M3DropGetMarkers | Identify marker genes
M3DropTestShift | Test for horizontal shift.
M3DropThreeSetVenn | Three-way Venn Diagram