bhuvad_theme            Custom theme
characteriseGeneset     Functionally characterise a list of genes
computeMsigNetwork      Compute a network using computed gene set
                        overlap
computeMsigOverlap      Compute gene set overlap
computeMsigWordFreq     Compute word frequencies for a single MSigDB
                        collection
findMsigClusters        Identify gene-set clusters from a gene-set
                        overlap network
getMsigBlacklist        Blacklist words for MSigDB gene set text mining
hgsc                    The Hallmark collection from the MSigDB
plotGeneStats           Plot gene statistics for clusters of gene sets
plotMsigNetwork         Plot a gene set overlap network
plotMsigPPI             Plot PPI network for gene-set clusters
                        identified using vissE
plotMsigWordcloud       Compute and plot word frequencies for multiple
                        MSigDB collections
