# Generated by roxygen2: do not edit by hand

export(evaluate_fits)
export(fit_logregr)
export(glm.predict.)
export(list_mismatches)
export(p_prior_errors)
export(p_prior_mutations)
export(pileup_by_QUAL)
export(single_consensus_byBarcode)
export(single_evaluate)
export(single_train)
export(weighted_consensus)
import(Rsamtools)
import(dplyr)
importFrom(BiocGenerics,start)
importFrom(Biostrings,DNAString)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,PhredQuality)
importFrom(Biostrings,QualityScaledDNAStringSet)
importFrom(Biostrings,compareStrings)
importFrom(Biostrings,extractAt)
importFrom(Biostrings,oligonucleotideFrequency)
importFrom(Biostrings,quality)
importFrom(Biostrings,readDNAStringSet)
importFrom(Biostrings,readQualityScaledDNAStringSet)
importFrom(Biostrings,replaceAt)
importFrom(Biostrings,subseq)
importFrom(Biostrings,vmatchPattern)
importFrom(Biostrings,width)
importFrom(Biostrings,writeQualityScaledXStringSet)
importFrom(GenomicAlignments,seqnames)
importFrom(GenomicAlignments,sequenceLayer)
importFrom(GenomicAlignments,strand)
importFrom(IRanges,IRanges)
importFrom(IRanges,pos)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,PileupParam)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,pileup)
importFrom(Rsamtools,scanBam)
importFrom(dplyr,"%>%")
importFrom(dplyr,left_join)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(methods,as)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(stats,coefficients)
importFrom(stats,glm)
importFrom(stringr,str_locate_all)
importFrom(stringr,str_sub)
importFrom(tidyr,replace_na)
importFrom(utils,globalVariables)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)
