miloR-package	miloR-package
annotateNhoods	annotateNhoods
buildFromAdjacency	buildFromAdjacency
buildGraph	buildGraph
buildNhoodGraph	buildNhoodGraph
calcNhoodDistance	calcNhoodDistance
calcNhoodExpression	calcNhoodExpression
countCells	countCells
findNhoodGroupMarkers	findNhoodGroupMarkers
findNhoodMarkers	findNhoodMarkers
graph	methods
graph,Milo-method	methods
graph<-	methods
graph<-,Milo-method	methods
graphSpatialFDR	graphSpatialFDR
groupNhoods	groupNhoods
makeNhoods	makeNhoods
matrixORMatrix-class	matrixORMatrix-class
Milo	Milo
Milo-class	Milo
Milo-methods	methods
nhoodAdjacency	methods
nhoodAdjacency,Milo-method	methods
nhoodAdjacency<-	methods
nhoodAdjacency<-,Milo-method	methods
nhoodCounts	methods
nhoodCounts,Milo-method	methods
nhoodCounts<-	methods
nhoodCounts<-,Milo-method	methods
nhoodDistances	methods
nhoodDistances,Milo-method	methods
nhoodDistances<-	methods
nhoodDistances<-,Milo-method	methods
nhoodExpression	methods
nhoodExpression,Milo-method	methods
nhoodExpression<-	methods
nhoodExpression<-,Milo-method	methods
nhoodGraph	methods
nhoodGraph,Milo-method	methods
nhoodGraph<-	methods
nhoodGraph<-,Milo-method	methods
nhoodIndex	methods
nhoodIndex,Milo-method	methods
nhoodIndex<-	methods
nhoodIndex<-,Milo-method	methods
nhoodReducedDim	methods
nhoodReducedDim,Milo-method	methods
nhoodReducedDim<-	methods
nhoodReducedDim<-,Milo-method	methods
nhoods	methods
nhoods,Milo-method	methods
nhoods<-	methods
nhoods<-,Milo-method	methods
plotDAbeeswarm	plotDAbeeswarm
plotNhoodExpressionDA	plotNhoodExpressionDA
plotNhoodExpressionGroups	plotNhoodExpressionDA
plotNhoodGraph	plotNhoodGraph
plotNhoodGraphDA	plotNhoodGraphDA
plotNhoodGroups	plotNhoodGraphDA
plotNhoodMA	plotNhoodMA
plotNhoodSizeHist	plotNhoodSizeHist
show	methods
show,Milo-method	methods
sim_discrete	sim_discrete
sim_trajectory	sim_trajectory
testDiffExp	testDiffExp
testNhoods	testNhoods
