Package: lefser
Type: Package
Title: R implementation of the LEfSE method for microbiome biomarker
        discovery
Description: lefser is an implementation in R of the popular 
  "LDA Effect Size (LEfSe)" method  for microbiome biomarker discovery. It uses 
  the Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant
  Analysis to find biomarkers of groups and sub-groups.
Version: 1.6.0
Authors@R: c(
  person("Asya", "Khleborodova", email = "asya.bioconductor@gmail.com",
      role = c("cre", "aut")),
  person("Ludwig", "Geistlinger", email = "Ludwig.Geistlinger@sph.cuny.edu",
      role = "ctb"),
  person("Marcel", "Ramos", email = "marcel.ramos@roswellpark.org",
      role = "ctb", comment = c(ORCID = "0000-0002-3242-0582")),
  person("Levi", "Waldron", email ="levi.waldron@sph.cuny.edu", role = "ctb")
  )
License: Artistic-2.0
LazyData: true
Depends: SummarizedExperiment, R (>= 4.0.0)
Imports: coin, MASS, ggplot2, stats, methods
Suggests: knitr, rmarkdown, curatedMetagenomicData, BiocStyle,
        testthat, pkgdown, covr, withr
Encoding: UTF-8
BugReports: https://github.com/waldronlab/lefser/issues
URL: https://github.com/waldronlab/lefser
VignetteBuilder: knitr
biocViews: Software, Sequencing, DifferentialExpression, Microbiome,
        StatisticalMethod, Classification
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/lefser
git_branch: RELEASE_3_15
git_last_commit: dd0b784
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: no
Packaged: 2022-04-26 23:27:14 UTC; biocbuild
Author: Asya Khleborodova [cre, aut],
  Ludwig Geistlinger [ctb],
  Marcel Ramos [ctb] (<https://orcid.org/0000-0002-3242-0582>),
  Levi Waldron [ctb]
Maintainer: Asya Khleborodova <asya.bioconductor@gmail.com>
Built: R 4.2.0; ; 2022-04-27 09:39:42 UTC; windows
