# Functional analysis of metabolic and transcriptomic data

## Documentation for package ‘famat’ version 1.6.6

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

compl_data | Data preparation for Shiny interface
compl_data_result | Output of 'compl_data' function
consensusPath | The variables in the environment variable 'MPINetData' of the system
genes | List of genes.
getBackground | The variables in the environment variable 'MPINetData' of the system
getnodeseq | The variables in the environment variable 'MPINetData' of the system
getpathList('KEGG') | The variables in the environment variable 'MPINetData' of the system
getStr | The variables in the environment variable 'MPINetData' of the system
interactions | Interactions between genes and metabolites
interactions_result | Output of 'interactions' function
listk | Pathway enrichment analysis results for KEGG pathways.
listr | Pathway enrichment analysis results for Reactome pathways.
listw | Pathway enrichment analysis results for Wikipathways pathways.
meta | List of metabolites.
MPINetData | The variables in the environment variable 'MPINetData' of the system
path_enrich | Pathway enrichment analysis
rshiny | Shiny interface