HSMM_lda_model          Pre-computed LDA model for HSMMSingleCell data
cell.ordering.table     Ranking of cells according to backbone tree
                        structure
cellTree-package        Inference and visualisation of Single-Cell
                        RNA-seq Data data as a hierarchical tree
                        structure
compute.backbone.tree   Backbone Tree construction
compute.go.enrichment   Gene Ontology enrichment analysis
compute.lda             LDA model inference
ct.plot.go.dag          Gene Ontology enrichment sets plotting
ct.plot.grouping        Plot cell tree with grouping information
ct.plot.heatmap         Gene Expression Heatmap
ct.plot.topics          Plot cell tree with topic distributions
get.cell.dists          Cell Pairwise-Distance Matrix
go.results.to.latex     LaTeX output for Gene Ontology Enrichment
                        results
