addKnowledge	addKnowledge
areaCAT	areaCAT
CAT	CAT
checkNormalization	checkNormalization
createColors	createColors
createConcordance	createConcordance
createEnrichment	createEnrichment
createMocks	createMocks
createPositives	createPositives
createSplits	createSplits
createTIEC	createTIEC
DA_ALDEx2	DA_ALDEx2
DA_ANCOM	DA_ANCOM
DA_basic	DA_basic
DA_dearseq	DA_dearseq
DA_DESeq2	DA_DESeq2
DA_edgeR	DA_edgeR
DA_limma	DA_limma
DA_MAST	DA_MAST
DA_metagenomeSeq	DA_metagenomeSeq
DA_NOISeq	DA_NOISeq
DA_Seurat	DA_Seurat
enrichmentTest	enrichmentTest
extractDA	extractDA
extractStatistics	extractStatistics
fitDM	fitDM
fitHURDLE	fitHURDLE
fitModels	fitModels
fitNB	fitNB
fitZIG	fitZIG
fitZINB	fitZINB
getDA	getDA
getPositives	getPositives
getStatistics	getStatistics
get_counts_metadata	get_counts_metadata
iterative_ordering	iterative_ordering
meanDifferences	meanDifferences
microbial_metabolism	microbial_metabolism
norm_CSS	norm_CSS
norm_DESeq2	norm_DESeq2
norm_edgeR	norm_edgeR
norm_TSS	norm_TSS
plotConcordance	plotConcordance
plotConcordanceDendrogram	plotConcordanceDendrogram
plotConcordanceHeatmap	plotConcordanceHeatmap
plotContingency	plotContingency
plotEnrichment	plotEnrichment
plotFPR	plotFPR
plotKS	plotKS
plotLogP	plotLogP
plotMD	plotMD
plotMutualFindings	plotMutualFindings
plotPositives	plotPositives
plotQQ	plotQQ
plotRMSE	plotRMSE
prepareObserved	prepareObserved
ps_plaque_16S	ps_plaque_16S
ps_stool_16S	ps_stool_16S
RMSE	RMSE
runDA	runDA
runMocks	runMocks
runNormalizations	runNormalizations
runSplits	runSplits
setNormalizations	setNormalizations
set_ALDEx2	set_ALDEx2
set_ANCOM	set_ANCOM
set_basic	set_basic
set_dearseq	set_dearseq
set_DESeq2	set_DESeq2
set_edgeR	set_edgeR
set_limma	set_limma
set_MAST	set_MAST
set_metagenomeSeq	set_metagenomeSeq
set_NOISeq	set_NOISeq
set_Seurat	set_Seurat
weights_ZINB	weights_ZINB
