Package: TCGAutils
Title: TCGA utility functions for data management
Version: 1.16.1
Description: A suite of helper functions for checking and manipulating TCGA data
    including data obtained from the curatedTCGAData experiment package. These
    functions aim to simplify and make working with TCGA data more manageable.
Authors@R: c(
    person("Marcel", "Ramos", email = "marcel.ramos@roswellpark.org",
        role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3242-0582")),
    person("Lucas", "Schiffer", role = "aut"),
    person("Sean", "Davis", role = "ctb"),
    person("Levi", "Waldron", role = "aut")
    )
Depends: R (>= 4.0.0)
Imports: AnnotationDbi, BiocGenerics, GenomeInfoDb, GenomicFeatures,
        GenomicRanges, GenomicDataCommons, IRanges, methods,
        MultiAssayExperiment, RaggedExperiment (>= 1.5.7), rvest,
        S4Vectors, stats, stringr, SummarizedExperiment, utils, xml2
Suggests: AnnotationHub, BiocFileCache, BiocStyle, curatedTCGAData,
        ComplexHeatmap, devtools, dplyr, httr,
        IlluminaHumanMethylation450kanno.ilmn12.hg19, impute, knitr,
        magrittr, mirbase.db, org.Hs.eg.db, RColorBrewer, readr,
        rmarkdown, RTCGAToolbox (>= 2.17.4), rtracklayer, R.utils,
        testthat, TxDb.Hsapiens.UCSC.hg18.knownGene,
        TxDb.Hsapiens.UCSC.hg19.knownGene
License: Artistic-2.0
Encoding: UTF-8
BugReports: https://github.com/waldronlab/TCGAutils/issues
biocViews: Software, WorkflowStep, Preprocessing
VignetteBuilder: knitr
RoxygenNote: 7.2.1
git_url: https://git.bioconductor.org/packages/TCGAutils
git_branch: RELEASE_3_15
git_last_commit: c707a87
git_last_commit_date: 2022-10-11
Date/Publication: 2022-10-13
NeedsCompilation: no
Packaged: 2022-10-14 01:14:08 UTC; biocbuild
Author: Marcel Ramos [aut, cre] (<https://orcid.org/0000-0002-3242-0582>),
  Lucas Schiffer [aut],
  Sean Davis [ctb],
  Levi Waldron [aut]
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>
Built: R 4.2.1; ; 2022-10-14 10:30:03 UTC; windows
