d207e3e77f73390142f674c9e70ffe31 *CITATION
2bb4eecac7aaf2d94fc3c4e10524c5f8 *DESCRIPTION
c02321671d3ba15ce8719fe3e77775d2 *INDEX
ba3033c17fe41b57e24584bb1b520cac *Meta/Rd.rds
4c8d7c6d197bc337512e38c3e7fc8ed1 *Meta/data.rds
9c6fc9444f1d52dca2f8e75b612d7e36 *Meta/features.rds
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2371fa2f386e5064b3eb4cf07f0a6363 *Meta/links.rds
c5cd4eab296bc33f2aa9aa935d3e2313 *Meta/nsInfo.rds
e9bd4f24c32acf83df25677d90ce3d7c *Meta/package.rds
18fd7d4a9ced30a95f097242eb295337 *Meta/vignette.rds
5151c82f0d6d43c6971bd7b7f7816ab1 *NAMESPACE
851df1a6d063aa4b69fd2073e3720948 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/PureCN
92b87cc338025d7349f31bd9cacc478d *R/PureCN.rdb
0ec5605ac3e3e7a1d84ce7fdd214a674 *R/PureCN.rdx
dac568957f53b15644938f4ea7e99523 *data/centromeres.rda
3b43e27c728d8531b64372cc8960bbf1 *data/purecn.DNAcopy.bdry.rda
32ecf6d03fd075804cea0efcbd740fa0 *data/purecn.example.output.rda
ea119dcd4c68600eaa6566ac8d2ae6bf *doc/PureCN.R
f25d18de3651dc249a4f3338d9b2184e *doc/PureCN.Rnw
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3929cc9ce625f4f882cf31f66491c4e3 *doc/index.html
398cad7226ec59797734e9188b04ab4a *extdata/BenchmarkTumorOnly.R
e804f7735e4d57b76d6ab7c7db749683 *extdata/Coverage.R
67bd3be9f4e3a462ff7cd3e0578439ac *extdata/Dx.R
e50573cf7ddcfba570af4074cf45c886 *extdata/FilterCallableLoci.R
6737d4d803f86899392a857a576f70ae *extdata/IntervalFile.R
b61f88ca5b910702be13e2c1f66d218b *extdata/NormalDB.R
88a3a73d8eabc986ea7f0bbac2fb21f3 *extdata/PureCN.R
8212796045d23163776d02c9996f14a9 *extdata/buggy_cnvkit.seg.gz
dc147e94ae2855d472787c9ce77eb530 *extdata/dist/calculateSbdry.R
3e55f3cbacf0ade2c2a406f1ad3f51b7 *extdata/dist/downloadCentromeres.R
7df758adaaf5b6d487ac22e4dba6c31e *extdata/ex1.bam
1888862b9d22ddb8ca663eabc41c78f0 *extdata/ex1.bam.bai
7ff3a77a583973ad739082fc7d327298 *extdata/ex1_gcgene.txt
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692adc2219b6286156d029bc88f2ebdf *extdata/ex1_intervals_headered.txt
3600e3733184b2cf5822b61d26114658 *extdata/ex2_intervals.bed
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3182e4f35fef60cd6a0d9fdec742c79b *extdata/ex2_mappability.bed
66070567be0feb761cebd6051e37999e *extdata/ex2_mappability.bigWig
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35fcb62fd46b593d1269e249174c30ff *extdata/ex2_reference.fa.fai
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9b97a8416ce0918d993be657b41ef8b9 *extdata/ex3_intervals.bed
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cb4501c1bb40ad0b7af797f7a756d74e *extdata/example_cosmic.vcf.gz.tbi
1c28b0038d8c843f938f3a77f9f34faf *extdata/example_gatk4_denoised_cr.tsv.gz
5de34022e616b42afeda6dacae8f3321 *extdata/example_gatk4_modelfinal.seg.gz
7cf6ebfc8d897064bdcd935830ef708d *extdata/example_intervals.txt
889cd6d608956276074287eef52e78d3 *extdata/example_intervals_tiny.txt
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19754260b86d2459c35a3ce0db62fecf *extdata/example_normal.txt.gz
47dd683dc984b8fb750be503892d0488 *extdata/example_normal2.txt.gz
15d982eb620d8f5cdf671c75d96b745d *extdata/example_normal3.cnn
9f8f7691886d943ef1e0e70ca00cabf0 *extdata/example_normal4.cnr
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5bbd05573a604c237f387a59dccc6c3b *extdata/example_single.vcf.gz.tbi
c521b9c3edea6e878b701ef21c902ba8 *extdata/example_tumor.txt.gz
347456cd221abbd889d34786e4a5c225 *extdata/example_tumor2.txt.gz
77d4c608f251f9ce95bfec040912cd2c *extdata/example_tumor_tiny.txt
cfcfe0c54614686bd514ecafe41925c2 *extdata/example_vcf.vcf.gz
516302874424e3b8b8eaf5e45171da38 *extdata/example_vcf.vcf.gz.tbi
8ac01e4b1acc4ef4c4223b0c65a4018f *extdata/gatk4_m2_test_pon_db.tgz
512d62f2bb7bfca79b48d3164ce0bbd0 *extdata/gatk4_pon_db.tgz
c2cf4cd1c575357dede7a5f26780c2f4 *extdata/issue109.vcf.gz
4bd9f12430d82fde8901748a0f650f34 *extdata/issue184.vcf.gz
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8874f7bce1a87d827417fc0abf8f08b6 *extdata/issue192_tumor.cnr
3a49c7e98f57a1d8c39f6bb97cc7977e *extdata/issue192_tumor.seg
65c0d0db29e9eb08431353421592bdfe *extdata/issue62.vcf.gz
5a9102d13b20c08bb5d40c1cfd905f9a *extdata/issue62.vcf.gz.tbi
edf609a37d88244a6c43b8d7a4e86c27 *extdata/normalpanel.vcf.gz
d9676085e3af0a6e9847bf329e96e1be *extdata/normalpanel.vcf.gz.tbi
efc17f1901c0090230be09f42bd24366 *extdata/test_coverage_overlapping_intervals.txt
19cd14c8d5cac1db90418e977400cd86 *help/AnIndex
97a1f3865839926d22526858d9253491 *help/PureCN.rdb
8ab83a0c2535c2b30121997f1d6d3352 *help/PureCN.rdx
3abaf4a637972565c8ecf5792f32bac7 *help/aliases.rds
e06dfc5714bf989748461e460b323f09 *help/paths.rds
dbe9678e3c050c5f4b87dfb3718bfdd3 *html/00Index.html
3845aef6126cf18c45937f292f23508c *html/R.css
