.cleanRawPD             Clean raw Proteome Discoverer data
MSstatsBalancedDesign   Creates balanced design by removing overlapping
                        fractions and filling incomplete rows
MSstatsClean            Clean files generated by a signal processing
                        tools.
MSstatsConvert          MSstatsConvert: An R Package to Convert Data
                        from Mass Spectrometry Signal Processing Tools
                        to MSstats Format
MSstatsImport           Import files from signal processing tools.
MSstatsLogsSettings     Set how MSstats will log information from data
                        processing
MSstatsMakeAnnotation   Create annotation
MSstatsPreprocess       Preprocess outputs from MS signal processing
                        tools for analysis with MSstats
MSstatsSaveSessionInfo
                        Save session information
as.data.frame.MSstatsValidated
                        Convert output of converters to data.frame
as.data.table.MSstatsValidated
                        Convert output of converters to data.table
getInputFile            Get one of files contained in an instance of
                        'MSstatsInputFiles' class.
