Biotransformations      Biotransformations of the significant data
                        contained in a MAIT object are identified.
Database                Human Metabolome Database
LSDResults              Extractor of the Fisher's LSD tests from a MAIT
                        object
MAIT                    MAIT
MAIT-class              Class '"MAIT"'
MAIT.FeatureData-class
                        Class '"MAIT.FeatureData"'
MAIT.FeatureInfo-class
                        Class '"MAIT.FeatureInfo"'
MAIT.Parameters-class   Class '"MAIT.Parameters"'
MAIT.PhenoData-class    Class '"MAIT.PhenoData"'
MAIT.RawData-class      Class '"MAIT.RawData"'
MAIT.Validation-class   Class '"MAIT.Validation"'
MAITbuilder             MAIT constructor function when using external
                        peak data
Validation              Cross validated classification over the output
                        of the function 'signPeaksAnova' or function
                        'TStudent2Clases'
biotransformationsTable
                        biotransformationsTable
classNum                Sample number extractor for each class from a
                        MAIT object
classes                 Class names extractor from a MAIT object
classifRatioClasses     Class classification ratio extractor from a
                        MAIT object
featureID               Feature ID extractor from a MAIT object
featureInfo             Feature Info extractor from a MAIT object
featureSigID            Feature statistically significant ID extractor
                        from a MAIT object
getScoresTable          Returns a list with the peak scores, masses,
                        retention time and other information
identifyMetabolites     Metabolite identifier
loadings                Loadings extractor for either PCA or PLS models
metaboliteTable         Metabolite table generator
model                   Model extractor for either PCA or PLS models
models                  Model extractor from a MAIT object
negAdducts              Negative adducts table
ovClassifRatioData      Overall classification ratio extractor for MAIT
                        objects
ovClassifRatioTable     Overall classification table extractor for MAIT
                        objects
parameters              Extractor of the parameters used in the whole
                        run from a MAIT object
peakAnnotation          Spectra constructor and peak annotator
plotBoxplot             Prints a png file for each of the significant
                        peak/spectra present in the input
plotHeatmap             Builds ten heatmaps with different p-values and
                        clustering distances
plotPCA                 2D and 3D PCA scoreplots from a MAIT object
plotPLS                 2D and 3D PLS scoreplots from a MAIT object
posAdducts              Positive adducts table
pvalues                 Pvalues extractor from a MAIT object
pvaluesCorrection       P-values correction extractor from a MAIT
                        object
rawData                 Raw data extractor from a MAIT object
resultsPath             Retrieves the folder where the results are
                        saved for a MAIT object
sampleProcessing        Peak detector of netCDF samples using xcms
                        package
scores                  Retrieves the scores from a MAIT object
sigPeaksTable           Build a table of the information related to the
                        significant features contained in a MAIT object
spectralSigFeatures     Extract significant features from a MAIT object
