LowMACA-package	LowMACA-package
alignSequences	alignSequences
alignSequences,LowMACA-method	LowMACA-class
allPfamAnalysis	allPfamAnalysis
BLOSUM62	BLOSUM62
bpAll	bpAll
bpAll,LowMACA-method	LowMACA-class
entropy	entropy
entropy,LowMACA-method	LowMACA-class
getMutations	getMutations
getMutations,LowMACA-method	LowMACA-class
lfm	lfm
lfm,LowMACA-method	LowMACA-class
lfmSingleSequence	lfmSingleSequence
lfmSingleSequence,LowMACA-method	LowMACA-class
lmAlignment	lmAlignment
lmAlignment,LowMACA-method	LowMACA-class
lmEntropy	lmEntropy
lmEntropy,LowMACA-method	LowMACA-class
lmMutations	lmMutations
lmMutations,LowMACA-method	LowMACA-class
lmObj	lmObj
lmParams	lmParams
lmParams,LowMACA-method	LowMACA-class
lmParams<-	lmParams
lmParams<-,LowMACA-method	LowMACA-class
lmPlot	lmPlot
lmPlot,LowMACA-method	LowMACA-class
lmPlotSingleSequence	lmPlotSingleSequence
lmPlotSingleSequence,LowMACA-method	LowMACA-class
LowMACA	LowMACA-package
LowMACA-class	LowMACA-class
LowMACA_AML	LowMACA_AML
mapMutations	mapMutations
mapMutations,LowMACA-method	LowMACA-class
newLowMACA	newLowMACA
nullProfile	nullProfile
nullProfile,LowMACA-method	LowMACA-class
parallelize	parallelize
parallelize,LowMACA-method	LowMACA-class
parallelize<-	parallelize
parallelize<-,LowMACA-method	LowMACA-class
protter	protter
protter,LowMACA-method	LowMACA-class
setup	setup
setup,LowMACA-method	LowMACA-class
show,LowMACA-method	LowMACA-class
showTumorType	showTumorType
