Package: LowMACA
Type: Package
Title: LowMACA - Low frequency Mutation Analysis via Consensus
        Alignment
Version: 1.26.2
Date: 2022-10-13
Author: Giorgio Melloni , Stefano de Pretis
Maintainer: Giorgio Melloni <melloni.giorgio@gmail.com> , Stefano de Pretis <ste.depo@gmail.com>
Description: The LowMACA package is a simple suite of tools to investigate and analyze the mutation profile of several proteins or pfam domains via consensus alignment. You can conduct an hypothesis driven exploratory analysis using our package simply providing a set of genes or pfam domains of your interest.
License: GPL-3
Depends: R (>= 2.10)
Imports: cBioPortalData, parallel, stringr, reshape2, data.table,
        RColorBrewer, methods, LowMACAAnnotation, BiocParallel,
        motifStack, Biostrings, httr, grid, gridBase, plyr
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: SomaticMutation, SequenceMatching, WholeGenome, Sequencing,
        Alignment, DataImport, MultipleSequenceAlignment
SystemRequirements: clustalo, gs, perl
git_url: https://git.bioconductor.org/packages/LowMACA
git_branch: RELEASE_3_15
git_last_commit: 96c7696
git_last_commit_date: 2022-10-13
Date/Publication: 2022-10-16
NeedsCompilation: no
Packaged: 2022-10-16 23:15:11 UTC; biocbuild
Built: R 4.2.1; ; 2022-10-17 10:00:44 UTC; windows
