298517ebb0fd29d91697414f33d1786c *DESCRIPTION
c9f3b4bfb860074a197a2ce8b2af518c *INDEX
f4f6e722a6da712833227c74754281ec *Meta/Rd.rds
795ef1933dd6e5a92764af4150ef47ba *Meta/features.rds
f84a04716310d05506c5c4978d7ae403 *Meta/hsearch.rds
e659f5b67bc39a8f6b750298ecb42171 *Meta/links.rds
7bcef77023c5ac75a750e1442785e826 *Meta/nsInfo.rds
275284be3edca8b19e504d8e413f55c3 *Meta/package.rds
e24e53c51d53f9c148cbe0a8e8a66189 *Meta/vignette.rds
c5e7e2891b759bdbd90632fcc2c6f2e5 *NAMESPACE
92c073a1932d9468161f9f90bd3498a4 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/FLAMES
26457c2df744774a9244f19b631b8087 *R/FLAMES.rdb
7427af8fd7447e425101529eadb6da44 *R/FLAMES.rdx
e8438898c35d80531f06807aa5ea4a37 *doc/FLAMES_vignette.R
d3cdd836185a310e9f8960e9225141b6 *doc/FLAMES_vignette.Rmd
1e49144934ccb8149a105a946b15cf72 *doc/FLAMES_vignette.html
05cc554386ae319c3ae3efa55af15251 *doc/index.html
36a28d52fa2cc795207206a6058a56e7 *examples/pipeline_example.R
29740bdf3166cd9e8b9121a983ac9cee *examples/windows_bulk_pipeline.R
31170638db6981a465b0bb205d597080 *extdata/SIRV_anno.gtf
c7dd8a80bfb5da73e7a0692023290099 *extdata/SIRV_config_default.json
adc9a5a8213b234b55f00b630c87a93f *extdata/SIRV_genomefa.fasta
1b90b8e750979b42a4f3873042fbd4e4 *extdata/fastq/sample1.fastq.gz
db95eb96adc1bc0ba7fd0cfa7fcbf23e *extdata/fastq/sample2.fastq.gz
a4e132f5b530a046ef6db24a3da0bc9f *extdata/isoform_annotated.gff3
b0927502ac9826c53f6c938a1c009697 *help/AnIndex
337b11bca9e070daf4a3a210217ab9c5 *help/FLAMES.rdb
b0bc8c9b11aca5f31c2ac714d51870fb *help/FLAMES.rdx
14eeb497fec415c5dfc92c50c6d2ea82 *help/aliases.rds
f0a45e2e1ccf0d5107fa3e8732618fe8 *help/paths.rds
a7ed4c5005b7dfa9d2ebe11f46402234 *html/00Index.html
3845aef6126cf18c45937f292f23508c *html/R.css
7b15763798c65b3f46fbc5e2ee34591f *images/FLAMES-01.png
ba5108a1c88a62ada9519cd9aee38ed5 *images/FLAMESpipeline-01.png
60253d10fe9df0693903fbb49fbb95a4 *libs/x64/FLAMES.dll
8ee5cedca1afa37804575a925787cb73 *python/__pycache__/test2.cpython-36.pyc
a9ba5a82b2520719f1730c17102b59ce *python/bam_mutations.py
7ecdb9d72563eba26ca3215b20771e66 *python/bulk_long_pipeline.py
52ce9aed63535461bc57da2c560d9dba *python/comp_splicing.py
37254f35c2fd27ae0204283bd43b2082 *python/config_sclr_nanopore_default.json
ef6cce2a64222cce23a8abbf6ff4bd4c *python/count_tr.py
14831ea2dbfa8c368bf0ea8814bb7c6a *python/filter_gff.py
361a5f177e4c2541c7d195cd86a59a9d *python/find_isoform.py
7c013b5621377808f1da79f7958d47db *python/gff3_to_fa.py
b93d29c3f546512f6505058e3dff7252 *python/gtf_to_bed.py
b5d1fa5ed815ad66e9c5106a35d40ad7 *python/merge_bulk_fq.py
8cebcaa12d3f5fa5f153ae6349f5dd43 *python/minimap2_align.py
2dcd1950b31d27de5135274bfd3386e7 *python/parse_config.py
50a3c605ae0979844a6af4d61f4fb600 *python/parse_gene_anno.py
71ba322c4724833eefce83a4fdde36e3 *python/sc_long_pipeline.py
91ec612ace611893a87b491153ca698c *python/sc_longread.py
438672462f223c6f94b2b3e2adddebad *python/sc_mutations.py
