# Generated by roxygen2: do not edit by hand

export(EpiCompare)
export(fragment_info)
export(gather_files)
export(overlap_heatmap)
export(overlap_percent)
export(overlap_stat_plot)
export(overlap_upset_plot)
export(peak_info)
export(plot_ChIPseeker_annotation)
export(plot_chromHMM)
export(plot_enrichment)
export(tidy_peakfile)
export(tss_plot)
export(width_boxplot)
export(write_example_peaks)
import(GenomicRanges)
import(clusterProfiler)
import(ggplot2)
import(methods)
import(org.Hs.eg.db)
importFrom(AnnotationHub,AnnotationHub)
importFrom(BRGenomics,tidyChromosomes)
importFrom(ChIPseeker,annotatePeak)
importFrom(ChIPseeker,enrichPeakOverlap)
importFrom(ChIPseeker,getPromoters)
importFrom(ChIPseeker,getTagMatrix)
importFrom(ChIPseeker,plotAvgProf)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(UpSetR,upset)
importFrom(dplyr,mutate)
importFrom(genomation,heatTargetAnnotation)
importFrom(genomation,readBed)
importFrom(ggplot2,ggplot)
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(plotly,plot_ly)
importFrom(plyranges,write_narrowpeaks)
importFrom(reshape2,melt)
importFrom(rmarkdown,render)
importFrom(rtracklayer,import)
importFrom(stats,quantile)
importFrom(stringr,str_split)
importFrom(stringr,str_wrap)
importFrom(tidyr,spread)
importFrom(utils,data)
importMethodsFrom(ChIPseeker,plotAnnoBar)
importMethodsFrom(GenomicRanges,width)
importMethodsFrom(IRanges,findOverlaps)
importMethodsFrom(IRanges,subsetByOverlaps)
importMethodsFrom(S4Vectors,elementMetadata)
importMethodsFrom(S4Vectors,from)
importMethodsFrom(S4Vectors,to)
importMethodsFrom(genomation,annotateWithFeatures)
importMethodsFrom(rtracklayer,liftOver)
