extract_monocle_info {tradeSeq} | R Documentation

## Extract info from Monocle models

### Description

This function extracts info that will be used downstream to make `CellDataSet` objects compatible with a `tradeSeq` analysis

### Usage

    extract_monocle_info(cds)

### Arguments

`cds` | A `CellDataSet` object.

### Details

For now, this only works for the DDRTree dimentionality reduction. It is the one recommanded by the Monocle developers.

### Value

A list with four objects. A `pseudotime` matrix and a `cellWeights` matrix that can be used as input to `fitGAM` or `evaluateK`, the reduced dimension matrix for the cells, and a list of length the number of lineages, containing the reduced dimension of each lineage.

[Package tradeSeq version 1.3.13 Index]