feature_profile {structToolbox}R Documentation

Feature profile

Description

A plot visualising the change in intensity of a feature with a continuous variable such as time, dose, or run order.

Usage

feature_profile(
  run_order,
  qc_label,
  qc_column,
  colour_by,
  feature_to_plot,
  ...
)

Arguments

run_order

(character) The sample-meta column name containing run order.

qc_label

(character) The label used to identify QC samples.

qc_column

(character) The sample-meta column name containing the labels used to identify QC samples.

colour_by

(character) The sample-meta column name to used to colour the plot.

feature_to_plot

(numeric, character, integer) The name or column id of the plotted feature.

...

Additional slots and values passed to struct_class.

Value

A feature_profile object.

Examples

D = MTBLS79_DatasetExperiment()
C = feature_profile(run_order='sample_order',
    qc_label='QC',
    qc_column='class',
    colour_by='class',
    feature_to_plot=1)
chart_plot(C,D)
[Package structToolbox version 1.2.0 Index]