| allSitesName {sitePath} | R Documentation |
The function is a way to get position of the resulting sites
from SNPsites, fixationSites and
parallelSites. The numbering is consistent with what's being
set by setSiteNumbering
allSitesName(x, ...) ## S3 method for class 'SNPsites' allSitesName(x, ...) ## S3 method for class 'fixationSites' allSitesName(x, ...) ## S3 method for class 'parallelSites' allSitesName(x, ...) ## S3 method for class 'paraFixSites' allSitesName(x, ...)
x |
The object containing the sites from analysis |
... |
Other arguments |
An integer vector for sites position
data(zikv_tree)
msaPath <- system.file('extdata', 'ZIKV.fasta', package = 'sitePath')
tree <- addMSA(zikv_tree, msaPath = msaPath, msaFormat = 'fasta')
snp <- SNPsites(tree)
allSitesName(snp)