Reduced dimension plots
                        Plot specific reduced dimensions
SCESet                  The "Single Cell Expression Set" (SCESet) class
annotateBMFeatures      Get feature annotation information from Biomart
batchCorrectedAverages
                        Compute batch-corrected group-level averages
bootstraps              Accessor and replacement for bootstrap results
                        in a 'SingleCellExperiment' object
calculateDiffusionMap   Create a diffusion map from cell-level data
calculateMDS            Perform MDS on cell-level data
calculateNMF            Perform NMF on cell-level data
calculatePCA            Perform PCA on expression data
calculateTSNE           Perform t-SNE on cell-level data
calculateUMAP           Perform UMAP on cell-level data
defunct                 Defunct functions
getExplanatoryPCs       Per-PC variance explained by a variable
getVarianceExplained    Per-gene variance explained by a variable
ggcells                 Create a ggplot from a SingleCellExperiment
multiplot               Multiple plot function for ggplot2 plots
nexprs                  Count the number of non-zero counts per cell or
                        feature
norm_exprs              Additional accessors for the typical elements
                        of a SingleCellExperiment object.
plotColData             Plot column metadata
plotDots                Create a dot plot of expression values
plotExplanatoryPCs      Plot the explanatory PCs for each variable
plotExplanatoryVariables
                        Plot explanatory variables ordered by
                        percentage of variance explained
plotExpression          Plot expression values for all cells
plotGroupedHeatmap      Plot heatmap of group-level expression averages
plotHeatmap             Plot heatmap of gene expression values
plotHighestExprs        Plot the highest expressing features
plotPlatePosition       Plot cells in plate positions
plotRLE                 Plot relative log expression
plotReducedDim          Plot reduced dimensions
plotRowData             Plot row metadata
plotScater              Plot an overview of expression for each cell
retrieveCellInfo        Cell-based data retrieval
retrieveFeatureInfo     Feature-based data retrieval
runColDataPCA           Perform PCA on column metadata
runMultiUMAP            Multi-modal UMAP
scater-pkg              The 'scater' package
scater-plot-args        General visualization parameters
updateSCESet            Convert an SCESet object to a
                        SingleCellExperiment object
