# Generated by roxygen2: do not edit by hand

export(annotation_ext)
export(annotation_options)
export(available_projects)
export(available_samples)
export(compute_read_counts)
export(compute_scale_factors)
export(create_rse)
export(create_rse_manual)
export(expand_sra_attributes)
export(file_retrieve)
export(is_paired_end)
export(locate_url)
export(locate_url_ann)
export(project_homes)
export(read_counts)
export(read_metadata)
export(recount3_cache)
export(recount3_cache_files)
export(recount3_cache_rm)
export(transform_counts)
importFrom(BiocFileCache,bfcinfo)
importFrom(BiocFileCache,bfcremove)
importFrom(BiocFileCache,bfcrpath)
importFrom(GenomicRanges,GRanges)
importFrom(Matrix,readMM)
importFrom(R.utils,gunzip)
importFrom(RCurl,url.exists)
importFrom(S4Vectors,DataFrame)
importFrom(SummarizedExperiment,"assayNames<-")
importFrom(SummarizedExperiment,"metadata<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(data.table,fread)
importFrom(methods,is)
importFrom(rtracklayer,import.gff)
importFrom(sessioninfo,package_info)
importFrom(tools,R_user_dir)
importFrom(utils,read.delim)
