ae075240be742c0969aad9c94e6a5e31 *CITATION
7c08b06bc3da6ff82e002cbd6336d903 *DESCRIPTION
83e32a02102bd5db99b1abe76e72e452 *INDEX
a2fd7738673acc40352ddd9257aa7a65 *Meta/Rd.rds
30b1edaeba9da206dde8aff9df01ee55 *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
7fef0117e1e078270d8df0c0575be9e4 *Meta/hsearch.rds
6ee51983e6cd99925fdd472878fbe755 *Meta/links.rds
d647deffe954dfce7d1f4888b0dd6342 *Meta/nsInfo.rds
b76db5c8d4a4b44653a589c2aa66d2f4 *Meta/package.rds
299dfbd2f612c9b5a3253445f645fa4f *Meta/vignette.rds
e252bd722268a57cd6ebc4065b35b52b *NAMESPACE
88799e12a0bcb0bfc36b476bcb5951ad *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/rTRM
cfd53fd56cfc3c02106da3d6f293c254 *R/rTRM.rdb
648222965ed1eb2ebfea1f02eb5ea30a *R/rTRM.rdx
39cf1ac4f3cf9c8cc4705db309db9578 *data/biogrid_hs.rda
ad0a8c78b1877871d539d9de7f700ea3 *data/biogrid_mm.rda
f246fde7976b255f72367afee71bf9d9 *data/datalist
2bd1f5b9fc49bd5ba9911be8dd79973a *db/database.db
3c90d8c315cde66b14a4f346f33a7a85 *doc/index.html
ec23417ecfa7b09ee66b424f6cb1d30e *doc/rTRM_Introduction.R
10e871217ea32f1b3b025655c7337042 *doc/rTRM_Introduction.Rnw
dc33c82da2db7b6a8701405cf3d54a81 *doc/rTRM_Introduction.pdf
98b9ba03259ae6d5fc4516e7a658a10a *extra/ESC-expressed.txt
f658dbb8940b92bfdafc3dcf2cdb698f *extra/ESC_Sox2_peaks.txt
fbb496fd5991c64b1437c46008ae2c4a *extra/example.rda
ef10b0ee264bece1a4bc5de1d57d5102 *extra/pwm_mm_logn.rda
437a3b466c73481572d3acda987eacef *extra/sox2_enr.rda
8bf034224b0f19bbbb6cb98c90e979af *extra/sox2_motif_list.rda
380492bb98fe9ecd48241bc9ab42771c *extra/test.R
4fd5f8a7026274a26f8077d8a56011be *help/AnIndex
895c012371a00d203c11b8c29ca851d7 *help/aliases.rds
50ae7bcd81a5b7a8917fc48a0b725b1a *help/paths.rds
7bd8b5f1643d0b3658e33208b72d5df0 *help/rTRM.rdb
47a8b0d9c0cf14687bedaf7e6f581ff0 *help/rTRM.rdx
6132295dfc4c26b8c747a7bdc1473b8c *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4894f480923d78f478f3828d9856fe31 *html/annotateFreq.html
fe2382e8ce4bb880d5697b58df9d1ed1 *html/annotateModule.html
94626c1a685facfb7e8f66b30c264879 *html/annotateTRM.html
af4482d220e3b08a94259c7deb20e8ef *html/biogrid_hs.html
a102575567d8cc430a84f1041ec2c1dc *html/biogrid_mm.html
f50a5fd4fb1e26e977ad20ba6574223b *html/findTRM.html
9e9972ffee0738e49cd0085504b86f71 *html/getAnnotations.html
a75305b6133db72fe3e26c88421ed59a *html/getBiogridData.html
a72caaad77600300cc39bcef54b5f842 *html/getConcentricList.html
35a7bf790d512691a7af428f36aa5423 *html/getLargestComp.html
881b44f887ef206df8ac98671cc3b1ac *html/getMaps.html
64989fc6fc2bb24acd97f8207e014525 *html/getMatrices.html
af38b381121379d087ccb3421e1c526d *html/getMotifsFromEntrezgene.html
7d722adb27e794615912dce70767bc26 *html/getMotifsFromSymbol.html
dc6733f3a559ac43d30027c45996886d *html/getOrthologFromMatrix.html
71f3aeec84adfb3d84bd22e7ec117cdb *html/getOrthologs.html
a69c994d7526fe969fac7f007a4b7f49 *html/getOrthologsFromBiomart.html
31ce6b676abbbc9663f90d6d6938f5df *html/getSequencesFromGenome.html
25ab0318210f8756d12c803aecbb1015 *html/getSimilarityMatrix.html
d3a83b945dfa196fd4f235c689ad070c *html/getTFclass.html
ca54c1067e4f7eb8ec103ff154112839 *html/getTFclassFromEntrezgene.html
e1b1dc1fab4c5ba2cb9ee06c2dd24d47 *html/getTFterms.html
ce203940e6b06a499ced84a83b6e9968 *html/initBiomart.html
ca3dcb7de25d833f889c28b294337812 *html/layout.arc.html
677e7ecae82f75d5a468a6c3c02688ea *html/layout.concentric.html
33624ed97527c27985681d77f5e927c6 *html/plotDegree.html
4cd3e5a252df70dbc6413792eef43854 *html/plotGraph.html
0f10404831b1965e80035ae9714b4187 *html/plotTRM.html
5057e02fed05acf821e6eb30e2fef4fa *html/plotTRMlegend.html
be869af37eaf88fa0acac65b18d8388f *html/processBiogrid.html
7cb13172fc1a98e5a6959391b222bb6f *html/rTRM-package.html
0c64a05fbf9dc78c205f887e1be940f7 *html/removeVertices.html
d41e8f9115286437eaede19744fb92a3 *html/writeTRMreport.html
f41c2ce67d4c05dd947ee755befef8e9 *unitTests/test_findTRM.R
