model_human_full {progeny} | R Documentation

## The full human linear model underlying PROGENy

### Description

HGNC gene symbols in rows, pathways in columns. Pathway activity inference works by matrix multiplication of gene expression with the model.

### Format

The full human model contains 22479 genes, associated pathways, weight and the p-value.

gene

  gene names in HGNC symbols

pathway

  names of PROGENy pathways

weight

  z-scores for a given gene

p.value

  significance of gene in pathway

### Source

https://www.nature.com/articles/s41467-017-02391-6

### Examples

    get("model_human_full", envir = .GlobalEnv)

[Package progeny version 1.12.0 Index]