HMAnalysedPerturbationData-class
                        Data wrapper for analysed perturbation data
                        using a hierarchical model
NetworkAnalysedPerturbationData-class
                        Data wrapper for analysed perturbation data
                        using network diffusion
PerturbationData-class
                        Data wrapper for a data set of a perturbation
                        screen.
bootstrap               Create a bootstrap sample from a data-set
dataSet                 Getter for a data set
diffuse                 Network diffusion
filter                  Filter the rows of a perturbation data set
geneEffects             Getter for the complete list of genes and their
                        effect sizes
graph                   Getter for graph used for network diffusion
hm                      Jointly analyse multiple genetic perturbation
                        screens using a hierarchical model
inference               Getter for inference used for analysis of
                        perturbation data
isBootstrapped          Getter for boolean if boostrapping was used
modelFit                Getter for model fit
nestedGeneEffects       Getter for the completed list of nested gene
                        effects
params                  Getter for parameters used for analysis of
                        perturbation data
perturbatr-package      perturbatr
plot.NetworkAnalysedPerturbationData
                        Plot a 'NetworkAnalysedPerturbationData' object
plot.PerturbationData   Plot perturbation data
rbind.PerturbationData
                        Bind multiple perturbation data sets together
                        by row
rnaiscreen              A sample pan-pathogenic perturbation dataset
setModelData            Create model data for an hierarchical model
