FCStSNE {oneSENSE} | R Documentation

## tSNE and OneSENSE algorithm for FCS data

### Description

tSNE and OneSENSE algorithm for FCS data

### Usage

    FCStSNE(LoaderPATH = "fcs", ceil = 5000, FNnames = "names.csv",
      OutputSuffix = "Out", DotSNE = TRUE, DoOneSENSE = TRUE, Bins = 250)

### Arguments

`LoaderPATH` | Path where FCS file is located
`ceil` | Maximum number of cells to sample from each fcs sample/file
`FNnames` | .csv file generated when markers from each category are selected
`OutputSuffix` | suffix to name output folder
`DotSNE` | boolean, if TRUE do tSNE, if FALSE skip tSNE
`DoOneSENSE` | boolean, if TRUE do OneSENSE, if FALSE skip OneSENSE
`Bins` | number of bins to put the cell data into, DEFAULT = 250

### Value

FCS files, tSNE histograms, OneSENSE plot

### Examples

    #dir <- system.file('extdata/fcs', package='oneSENSE')
    #FCStSNE(LoaderPATH=dir, FNnames=fnnames) #remove hash symbol to run

[Package oneSENSE version 1.12.0 Index]