855d5eb680a81f26b53d869146ee4f40 *DESCRIPTION
e5bfc78a297e318c7815928d2d8931e2 *INDEX
38c208752a2c2970359645f3c6cf8f12 *Meta/Rd.rds
1b06568b4798264c65950e85d0ccbd3a *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
cf9bd9a3a1b1f37193fd4154b34dfd18 *Meta/hsearch.rds
fa280e8110b8111377145d5ec1c31925 *Meta/links.rds
ce58ed29945f9d65acfbc77a5fa7f185 *Meta/nsInfo.rds
d98c292e71a7eb7c42e4e55c0707705b *Meta/package.rds
29e2832bc8f47fd470c0ea294fdc5996 *Meta/vignette.rds
870cd75a8b2b6fb6c922af8e47e0ac40 *NAMESPACE
e19dfaf345e233ea1a820dd4cff5a22b *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/musicatk
5ea75ab91374da86f6cf0b52d7b40a7a *R/musicatk.rdb
9bdf9569cc951c22783e31a364c23b03 *R/musicatk.rdx
bcdfee1adf90985f93adf85a26e6513e *R/sysdata.rdb
20151f2276ee0b87a8f0497ae265516b *R/sysdata.rdx
d9efbc40ae6b488bbc3f70d33f6f8b14 *data/cosmic_v2_sigs.rda
a6dc2ec912ff8262c07f59ddce7215e8 *data/cosmic_v3_dbs_sigs.rda
5b58d733c481fbb29f42f0e5f3ac943e *data/cosmic_v3_indel_sigs.rda
333d4ccf59af0c45ce2a94c4417e474f *data/cosmic_v3_sbs_sigs.rda
b5090755f853323f649b62f50a49c7f3 *data/cosmic_v3_sbs_sigs_exome.rda
9647c0d3c6fcb0a111992fad6466d355 *data/dbs_musica.rda
dc835e37b6af36f27ecf5aa63f0e26e2 *data/indel_musica.rda
40d79f4dc94b93f99c1f3e3a6fe9226f *data/musica.rda
eb91bf04da2407ede9117c12976d5a6d *data/musica_annot.rda
7e024ea1eda068b583bf75cc5329f48c *data/musica_sbs96.rda
926f0bad4b48bd13c24f9f63bceadb24 *data/musica_sbs96_tiny.rda
34dbaa85293fe71e431d30ba6ad030a6 *data/rep_range.rda
58c3fb1bbbf82d6a36f0eaef09abe423 *data/res.rda
a2e5937f02291b34bb41c33664e30cea *data/res_annot.rda
9946e7b5ba3cadf46b76468c2f926ed1 *doc/index.html
4bb8299f49a77923e3e8b78be2eea91b *doc/musicatk.R
4ebdb02b524298fb418d99d9ed912398 *doc/musicatk.Rmd
1ccedc6d7cae1afcf56157dd102adaea *doc/musicatk.html
e651b9f791d0c38f2bd45aca9864cef9 *extdata/public_LUAD_TCGA-97-7938.vcf
15c6b74e55900b3c276db4cc3885f77f *extdata/public_SKCM_TCGA-EE-A3J5-06A-11D-A20D-08.vcf
3ea253273b24dd59a3016baee77ef91a *extdata/public_SKCM_TCGA-ER-A197-06A-32D-A197-08.vcf
a6d9fec3bbf4ff3b47a76eb83ad724ed *extdata/public_SKCM_TCGA-ER-A19O-06A-11D-A197-08.vcf
37706ffefe7ff446358829c5d04a4ae4 *extdata/public_TCGA.LUSC.maf
271456a707445309282c1460f964dd31 *extdata/sample_annotations.txt
15330f344cc29e14ad3a4c9ead76b475 *help/AnIndex
39edf993ecfc4b0237eee0f6206011b0 *help/aliases.rds
7dbdecad23f5fb9754fdd313fbf628a3 *help/musicatk.rdb
83ab72dd6edc21fa780f7ae101746f3d *help/musicatk.rdx
db4fed5a51f71cce9ca0bcbf6b985a3a *help/paths.rds
2ded89b78f4f6e54bbef2e2d7f9a3fd1 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
585850b71f8072e50328cc9c2d6be01e *html/add_flank_to_variants.html
f648ba54b5b5ca1a7220841921034495 *html/add_variant_type.html
48e93214a600e45bce5fade14fe9f672 *html/annotate_replication_strand.html
e22b5645dd091e25f38e2669e65bd3d2 *html/annotate_transcript_strand.html
3347511cdf758ef2fe0d560364c30d52 *html/annotate_variant_length.html
051a8326f1f9b12f545f2cc8b7e3ce29 *html/annotate_variant_type.html
9ec4cc87f45bd9d418aeca7440e4160a *html/auto_predict_grid.html
7d519ede99af345be67f22e5d9cf4fa8 *html/auto_subset_sigs.html
6fb51936a7800e3fd952148c64ab5646 *html/build_custom_table.html
d9e54ba65b2b801801827c122078dac3 *html/build_standard_table.html
e95ad912968af65480ca39c544eef5ba *html/combine_count_tables.html
6550058097577ce537ff73b99f35eafa *html/combine_predict_grid.html
382806c1af761cce8f8e5ad236137e18 *html/compare_cosmic_v2.html
b52f5c1c78f7ecb63c7595d8b0e81df7 *html/compare_cosmic_v3.html
b14f2edb9c1cc46d8b7e1cb8da312f34 *html/compare_results.html
ca89cf69263003b8260c0a1844437022 *html/cosmic_v2_sigs.html
1c8c4be8e2c450e8ac171eb34140736e *html/cosmic_v2_subtype_map.html
8d613ddd97b87b7b7d6ebe77c1d7d617 *html/cosmic_v3_dbs_sigs.html
7661adfa6c6501dd30d86bf7bc915c63 *html/cosmic_v3_indel_sigs.html
ff8e887a7057091a2afa960b00238b4a *html/cosmic_v3_sbs_sigs.html
ef69f7e8120f506241397371638a4ad7 *html/cosmic_v3_sbs_sigs_exome.html
cd12a13bc0ef104e0a65e2ac757c3f3b *html/count_table-class.html
4ed87aaa799386d4df9993fd48d2ffab *html/create_dbs_table.html
a119c9539786051af8e80e5694529edc *html/create_musica.html
8362b873158cbcffcb79966890777ba1 *html/create_sbs192_table.html
11d0e0c34195796251f38d45a0318346 *html/create_sbs96_table.html
e610494c0523e87fd58e41850aaf5e58 *html/create_umap.html
14992c834071dd84f777a321e8c104eb *html/dbs_musica.html
550814a4d949637da52e0a5d3bd3365c *html/discover_signatures.html
825b2e3d3a56355bcdf63b7a5f4e8a81 *html/dot-jsd.html
2c2039b3497e4eb512ca1943058d97a5 *html/drop_annotation.html
94eb74773922cbd909655734928d9b2c *html/exposures.html
51ba156c814e30568959dddfa7afb461 *html/extract_count_tables.html
109100271a2da323d6e1b98cf5f70e52 *html/extract_variants.html
f46d006cb68eb303044e0e57a88cb359 *html/extract_variants_from_maf.html
f47c0cca9074e8c860493c16a2819df3 *html/extract_variants_from_maf_file.html
6e8fb03f51ee0921afcc50909d3ad76e *html/extract_variants_from_matrix.html
a8beb586a68ce7b17ad4bd3371dbac64 *html/extract_variants_from_vcf.html
8a12ded93303a134ced68c3ea107324a *html/extract_variants_from_vcf_file.html
8a0f4291c624e7101f063ce810fb0e30 *html/generate_result_grid.html
85cbd94f37b594c650d678696c285a5e *html/indel_musica.html
c5560436904ac914b1a32fb8448ef129 *html/musica-class.html
d9de7c5437dbac898c5187d7135d0131 *html/musica.html
d794772e6fb65aba853e22c031c31f6b *html/musica_annot.html
47864b8bb4347402da0bd8437fc701d1 *html/musica_result-class.html
7c10eedd839ccd5f8bc84b5c59dd0939 *html/musica_result_grid-class.html
bee17064a50f7a88aba36fde19d71aec *html/musica_sbs96.html
00abe62a60b5589f1abc8b9e4c52042e *html/musica_sbs96_tiny.html
1be573bb864fd24205b8fd8f1cf8e9df *html/name_signatures.html
792d51a43ebf30dffa1dc992b66c5808 *html/pipe.html
da8389fcc8cd19f09d5993fae4c834d5 *html/plot_exposures.html
c74c0e5eab8feea533c0c39d7730f433 *html/plot_sample_counts.html
0c43e59f28188bccfd8956e81c490e0e *html/plot_sample_reconstruction_error.html
7e97e96281b17f5f2db38a57d9a27248 *html/plot_signatures.html
11dc1a4f2f54f8796d79b1aa1dc7fe61 *html/plot_umap.html
80be1b9392b305f38c69a85b67c5b919 *html/predict_exposure.html
4cf0cf061bf1bd28b6c5a20038b2e9f2 *html/rc.html
c43edecba50f257932d79c2e762d9108 *html/rep_range.html
aae84e3d5610b06723e8cca248d38ec7 *html/res.html
0ccf7b9241a40351cd8fff6ec0ebcdd0 *html/res_annot.html
a13d8ce18bff6f539cb1da54769287c4 *html/samp_annot.html
8805f0bab364397f7c372b6fbfbe6438 *html/sample_names.html
4fdfbe59f9a34e057d1b22e1716d6707 *html/select_genome.html
c9bd6eb38901769bda37fe9b27e8023f *html/signatures.html
cbd927f495d242cc80d4d4823c074d20 *html/subset_musica_by_annotation.html
39e0d733092bad566b8627ccb5d1e477 *html/subset_musica_by_counts.html
a7a747afcd597c7274aad97c0429ec4d *html/subset_variant_by_type.html
6770e54335a2096e29765a94edeb13fa *html/subset_variants_by_samples.html
7c014ef6be3cd0aa24819734fe8951ad *html/table_96.html
b6892b9324814d806e645d37cbb7a18d *html/table_name.html
849ef725b19858504facde88badae903 *html/tables.html
481fc81adbde1618921d9269a99f6e47 *html/umap.html
6f3435298cc853f330156ce92f8b15e9 *html/variants.html
0a78fc13c5130c01ecfa508da9b8f217 *script/example_data.R
