MosaicsFitParam-class {mosaics} | R Documentation

## Class "MosaicsFitParam"

### Description

This class represents parameters for mosaicsFit function.

### Objects from the Class

Objects can be created by calls of the form `new("MosaicsFitParam", ...)`.

### Slots

`k`:

  Object of class `"numeric"`, representing a parameter for mosaicsFit function.

`meanThres`:

  Object of class `"numeric"`, representing a parameter for mosaicsFit function.

`s`:

  Object of class `"numeric"`, representing a parameter for mosaicsFit function.

`d`:

  Object of class `"numeric"`, representing a parameter for mosaicsFit function.

### Author(s)

Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

### References

Kuan, PF, D Chung, G Pan, JA Thomson, R Stewart, and S Keles (2011), "A Statistical Framework for the Analysis of ChIP-Seq Data", Journal of the American Statistical Association, Vol. 106, pp. 891-903.

Chung, D, Zhang Q, and Keles S (2014), "MOSAiCS-HMM: A model-based approach for detecting regions of histone modifications from ChIP-seq data", Datta S and Nettleton D (eds.), Statistical Analysis of Next Generation Sequencing Data, Springer.

### See Also

`mosaicsFit`.

### Examples

    showClass("MosaicsFitParam")

[Package mosaics version 2.28.0 Index]