46b5ced3517b929ab2fe4cae253054ed *CITATION
be6c53e674343c517315fa1c6f57c48e *DESCRIPTION
a27543e4f018e7b35b2638ed8fdb14f4 *INDEX
5f731767bbd73a6d1cdae084ac4238de *Meta/Rd.rds
033013872cbfe4ec00bdf2486ce51aed *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
d739830fff43c3fde4fd365928460940 *Meta/hsearch.rds
80657846d7c1febf077d706ced9d5522 *Meta/links.rds
8acf9105e21e3374d828fc7a0f092250 *Meta/nsInfo.rds
891759fe53766ffde61db2531cad57ef *Meta/package.rds
1e618b74efc90735f3f4177fadf77a48 *Meta/vignette.rds
21d7f372069ba69a1a34e655352e3d04 *NAMESPACE
2507a5a02ee2af6b5995fb68b830916b *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/isobar
ee6cc84cd7c77e914e4660b6b4848069 *R/isobar.rdb
ae761016ffa3799f8f831abdc8607b51 *R/isobar.rdx
c7a5a70ebdebbb43c2e1ca9d1b0adee9 *data/datalist
b8b88836959bc4075f53f0c451dfe60b *data/ib_phospho.rda
0958cc4c886c489dda421ade8b7bddab *data/ibspiked_set1.rda
4a6ea3178279aefddcf6eb26f500e201 *data/ibspiked_set2.rda
20790378db1e8fc09a6ec329b91f2954 *data/noise.model.hcd.rda
163a311cc92f83bdf9f4c42e9128c9c5 *doc/index.html
3657e0dbdcb8fc8951e2fe604c35be02 *doc/isobar-devel.R
00750d7e0d90fea9eb3f348cb9735e75 *doc/isobar-devel.Rnw
81a82beecbe00445850608d8fc72bddb *doc/isobar-devel.pdf
9cdd609cdff0eb483b3c4be30ddc9df0 *doc/isobar-ptm.R
314da331a6a3811b2af10802037391c8 *doc/isobar-ptm.Rnw
24fdcb908e0bbc16e2d1026fb6bc7f49 *doc/isobar-ptm.pdf
8edfd6d1d02b284425d25dda029a92cc *doc/isobar-usecases.R
545d3ef59ef5f85f4b4da438f31e3e86 *doc/isobar-usecases.Rnw
5bf015b0b7fe2489f2e8ab6bdc2f71fc *doc/isobar-usecases.pdf
27e389d69560bc70be4f67850e716580 *doc/isobar.R
0286bb554d231774371cc1860a6f9e6a *doc/isobar.Rnw
763287268924a328ed07ac8689bb10eb *doc/isobar.pdf
67db5bcb1b2f3e7f10d8ac9f0fa01df4 *help/AnIndex
ee8fb31fb50bbe8c3369c5e12c25258c *help/aliases.rds
a7eb31cbeb8676c39f7cf57dbce7dcff *help/isobar.rdb
c2520b3aeee799301fa566815cfd26fa *help/isobar.rdx
f8199cfa5652598a840ebb2f6d76860b *help/paths.rds
2e147e3524be967c98b8ae9e05f06680 *html/00Index.html
060f8e4945e9fb1338dc6d8e8137e431 *html/IBSpectra-class.html
a4a5b6e13a5af65dd65305ac2b547617 *html/NoiseModel-class.html
2f0b23705767fd6956868e7914fe251a *html/ProteinGroup-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
843cd830501264540c6224a533c64eb9 *html/TlsParameter-class.html
0343d8fea95fca35f42c2bbdb5600499 *html/Tlsd-class.html
692636284efcd45f577ce54a8663daf9 *html/calc.delta.score.html
265e36027dbc2b0336da4f4720b77451 *html/calc.startpos.html
6e2c7e0f1d52d3380b184d0fae2c7b72 *html/calculate-pvalues.html
611c86b53d1b2ac1c3902445479bbb99 *html/calculate.dNSAF.html
da2c3419563c090447684349daf83893 *html/calculate.emPAI.html
aa1c8bccaa76ec0660b5269775670a39 *html/correct.peptide.ratios.html
503eca5d7c8c21ac90aa083346d53e1c *html/distr-methods.html
e6cd7143686768bbb07ae096e780c9fd *html/fit-distr.html
2943d377bbbaffdc8cb98aa729249410 *html/getPeptideModifContext.html
30b39aba6a6e3f30502e04d89f05245c *html/getPhosphoRSProbabilities.html
b74794f5fe3ea4597dcdd49038e1c140 *html/getPtmInfo.html
ad3d9920933af60757dd185d6da8bdc8 *html/groupMemberPeptides.html
cc7e3986fd6f6e4e2f6cb241df0a06fd *html/human.protein.names.html
efc3af9b1c20e5dec40d787b63821fb1 *html/isobar-analysis.html
49f45e149b5a0dc5881c0a27db0b2c41 *html/isobar-data.html
bf12908d467c463dca6cf1646a9907c5 *html/isobar-import.html
3fc18b297403d3155b27bcd04ca99e32 *html/isobar-log.html
1a1372ba43540f65d3debf331051bd3e *html/isobar-package.html
a1f80d81901d852ba536709a9dc153f6 *html/isobar-plots.html
0222796a2cbc3a6d2d9c396248bcb481 *html/isobar-preprocessing.html
975ffbb5a5364f16748b889d7e74f9e3 *html/isobar-reports.html
0a37df470cfb41146949061f6c1451ba *html/maplot.protein.html
2f5a891d371a3d8808bc800570044b83 *html/number.ranges.html
5ed21a54693f317295245549fb4a437c *html/observedKnownSites.html
4273e17b94c0ce7d972d7d62423047a2 *html/peptide.count.html
ac7c9421905b42e411e91ba433727225 *html/proteinInfo-methods.html
6f2833b435a96f36964a00f33b598b0b *html/proteinNameAndDescription.html
bfe3d6958f3ddc80755b7d0edd82c9b1 *html/ratio-summ.html
116d87098a294108ebb4c207a148aa83 *html/ratiosReshapeWide.html
906429b1db1723e5de5ac0ca25dd50f5 *html/reporter.protein-methods.html
66a415e56aeeb5d2318a8287ddeaa3d8 *html/sanitize.html
b1ed3a6b37c83eb3cb7196ce94856561 *html/shared.ratios.html
2ce0ddbca3b8d54a49f37ad9bb842b4f *html/shared.ratios.sign.html
95b0d441f9332fcbd24849c4a4c66761 *html/specificities.html
dff190b2d162e2fc8ebfb00018be9b67 *html/spectra.count2.html
24c6126e11dbf034cf14a1c83ed0edff *html/subsetIBSpectra.html
afd5d24c9ebc1f27edbb077b05e900ee *html/utils.html
89871fc9ec00ee8fd2e3f1f9d120ad9d *html/writeHscoreData.html
24bd7457f71bfe04ec2676296edccfb7 *html/writeIBSpectra.html
716d7b0757874cf8599448f4bee9810e *pl/mascotParser.ini
2cca5297323fc2a74017ecd7aea853c7 *pl/mascotParser2.pl
2584f52a48c4f9aa1f66a70a34f49ff9 *pl/mascotParserDelta_defunct.pl
1fd85c5cbbfe521feea3c2b7b58e6d41 *pl/modifconv.csv
161d85c51a7f2283c3d0b84e0429d1d7 *pl/msgfpParser.R
3228f3eec6684af3e5723965b9ea74fa *pl/parsersConfig.xml
91010e7dc5499a269a1afdecbaf810b9 *pl/pidresParser.ini
b2220fae9a1b8bc8bc6e7e00ab96f2da *pl/pidresParser2.pl
4cf5076ba456ba392fa144b2ae228e3a *pl/psx2tab2.pl
005ecccf798ee34040ca6d6219f47ee9 *pl/tab2psx.pl
4f2a0927cd8506c4eea0beef0120e954 *pl/tab2xls.pl
b602208b7fa19d3eb2368c7ce7bb5dfa *pl/tab2xlsx.pl
ce7394b1801aa8b2e9c3f89466c5e55f *report/create_ibspectra.R
847bd2f19c315fcef0d86ee5183c9fc8 *report/create_meta_report.R
1bb294af0062a7fdeffce36e51d3ee23 *report/create_proteingroup.R
0b83a654ee337fa19cc2468561549a6d *report/create_reports.R
4ac135db1b729216469fbb60408af484 *report/isobar-analysis.Rnw
4e4331c28fbbcfb0001d3dab0d66ee14 *report/isobar-qc.Rnw
b29144b3a608f3d62852d92b59aff480 *report/meta-properties.R
67028806951e58f04939bf9d42db0032 *report/properties.R
b272169b767e3f91437feb211b3b1c53 *report/report-utils.tex
