Phenotypes-class        Phenotypes
TargetRelations-class   TargetRelations
[,Phenotypes,ANY,ANY,ANY-method
                        Subsetting for Phenotype objects.
[,TargetRelations,ANY,ANY,ANY-method
                        Subsetting for TargetRelations objects.
annotate.gsp            annotate.gsp
as.data.frame,Phenotypes-method
                        Convert Phenotypes object to a data.frame
as.data.frame.concordance
                        Coerce method
c,Phenotypes-method     Concatenate Phenotypes objects
concordance             Evaluate the concordance between Phenotype
                        objects
dim,Phenotypes-method   Dimension of a 'Phenotypes' object
gespeR-class            gespeR
gespeR-package          Package: Gene-Specific Phenotype EstimatoR
gsp                     Retrieve GSPs and SSPs from 'gespeR' objects
join                    join
lasso.rand              Randomized Lasso
loadValues              Methods for values of 'TargetRelations' objects
na.rem                  Remove NA/Inf values from phenotype vectors
path<-                  path
plot.Phenotypes         Plot method for Phenotype objects
plot.concordance        Plot concordance
plot.gespeR             Plot method for 'gespeR' objects
rbo                     Rank biased overlap (Webber et al., 2010)
scores                  scores
simData                 Example data: Simulated phenotypes and target
                        relations for 4 screens (A, B, C, D)
stability               stability
stability.selection     Stability Selection
stabilityfits           Example fits for phenotypes from simulated
                        screening data A, B, C and D
target.relations        target.relations
values                  values
