ppi {geneplast} | R Documentation

## A pre-processed igraph object for the geneplast package.

### Description

An igraph object used to demonstrate geneplast main functions.

### Usage

    data(ppi.gs)

### Format

`ppi.gs`an igraph object.

### Details

Protein-protein interactions (PPI) mapped to H. sapiens apoptosis and genome-stability genes. The PPI information is derived from the STRING database, release 9.1, using combined score >=900 (Franceschini et al., 2013).

### Value

an igraph object.

### References

Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15. doi: 10.1093/nar/gks1094. Epub 2012 Nov 29.

### Examples

      data(ppi.gs)

[Package geneplast version 1.16.0 Index]