GCsizeFactors-methods   Method GCsizeFactors
LibraryType-methods     Method LibraryType
MeripBamFileList-class
                        Maintain and use BAM files in MeRIP-Seq
                        experiment
Parameter-methods       Method Parameter
Results-methods         Method Results
SummarizedExomePeak-class
                        SummarizedExomePeak
call_peaks_with_GLM     Statistical Inference with DESeq package based
                        on the provided reads count for exomic bins.
estimateSeqDepth-methods
                        Method estimateSeqDepth
exomePeak2              Peak Calling and Peak Statistics Quantification
                        on MeRIP-seq Dataset.
exomePeak2Results-methods
                        Method exomePeak2Results
exomePeakCalling-methods
                        Method exomePeakCalling
exonPlot                plot the distribution for the length of the
                        overlapped exons.
exportResults-methods   Method exportResults
glmDM-methods           Method glmDM
glmM-methods            Method glmM
normalizeGC-methods     Method normalizeGC
plotExonLength-methods
                        Method plotExonLength
plotLfcGC-methods       Method plotLfcGC
plotReadsGC-methods     Method plotReadsGC
plotSizeFactors-methods
                        Method plotSizeFactors
quiet                   Silencing unwanted function output.
scanMeripBAM            Organize the BAM Files Information of a
                        MeRIP-seq Data Set.
