characterORexpressionOrCall-class
                        S4 Class Union with character/expression/call
esetLda                 plot a biplot of a linear discriminant analysis
                        of an eSet object
esetPlot-class          An S4 class to represent 'esetPlot' object
                        expressionSet with visualization data from
                        dimension-reduction methods
esetPlotInteractive-class
                        a S4 class to represent interactive plots
esetPlotWrapper         wrapper for biplot of features/samples
                        contained in a eSet object
esetSpectralMap         plot a spectral map biplot of an eSet.
esetTsne                plot a t-SNE of an eSet object
formatManualScale       extend manual scale values if required
formatOutput            format output of plotEset function
getAxesLimits           generic for get axes limits
getCoordGeneSets        extract coordinates gene sets
getDataPlotSamplesWithAnnotation
                        get sample data for plot
getGeneSetsForPlot      get gene sets for plot of eSet object.
getMethodsInputObjectEsetVis
                        wrapper to extract useful functions, depending
                        if the object is an ExpressionSet or a
                        SummarizedExperiment.
ggPlotEset              visualize and esetPlot with the 'ggplot2'
                        package
ggplotEsetPlot-class    a S4 class to represent 'ggplot' plots
ggvisEsetPlot-class     a S4 class for 'ggvis' plot
ggvisPlotEset           visualize and esetPlot with the the 'ggvis'
                        package
plotEset                plot an plotEset object
plotTopElements         create 'geom_text' object with top
                        genes/sample/pathways
rbokehEsetPlot-class    a S4 class to represent 'rbokeh' plots
rbokehPlotEset          visualize and esetPlot with the the 'rbokeh'
                        package
setFixElement           check if the aesthetic is fixed (e.g. color,
                        shape, size 'palette')
setManualScale          check if manual aesthetic should be set
simpleCap               capitalize the first letter of a word
