KEGG_path2extid {clusterProfiler}R Documentation

KEGG_path2extid

Description

query all genes in a KEGG pathway or module

Usage

KEGG_path2extid(
  keggID,
  species = sub("\\d+$", "", keggID),
  keggType = "Path",
  keyType = "kegg"
)

Arguments

keggID

KEGG ID, path or module ID

species

species

keggType

one of 'Path' or 'Module'

keyType

KEGG gene type, one of "ncbi-proteinid", "ncbi-geneid", "uniprot", or "kegg"

Value

extid vector

Author(s)

guangchuang yu

[Package clusterProfiler version 3.18.1 Index]