959503b57ed4b3644a70173db052ee02 *DESCRIPTION
1b1474442473c4d14baa6acf93cfdba6 *INDEX
59c12faf715a32c3991a9560374ac508 *Meta/Rd.rds
988f39f986538a7b4333a7c97153d059 *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
6cbe7c7fef5604f688265c4450b2e7d2 *Meta/hsearch.rds
5f69bff4ab1c827289a184d93bb57606 *Meta/links.rds
0e49c341dc90f7ed420f027de8804185 *Meta/nsInfo.rds
ad5ae750ee5174412e24485ad2c91801 *Meta/package.rds
6b35066d5b2c268e1377d50385eeb649 *Meta/vignette.rds
8406fd1414247da7405904c2546ad3c6 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/chipseq
ca7de8c9c2e70941fe9fa35771304daa *R/chipseq.rdb
dd4dcc41b027bfe5bad2c9a19cbb0681 *R/chipseq.rdx
c67ac49dbe2a5c389a1b642feed5cbc9 *Scripts/AntibodyComparison.Rnw
630a273418c2f9ea72fc5134e7ec70dd *Scripts/CTCFBindingSites.R
ca9cf8135dd0e90c84a79c7d25b67f8e *Scripts/CTCF_ERV.R
aee97330bc6fc5325ce931bed2ce78db *Scripts/CopyNumber.Rnw
b9fdf9ddd9d25837d91b84181d44a947 *Scripts/Islands.Rnw
d3e0e7d6d67905e3f34b7b3115d6729a *Scripts/MyoD.R
70ed9c49dec4afdb22fde785402b70ba *Scripts/PairedEndComparison.Rnw
dcb4e37001f03145920d1c8ff3117e0f *Scripts/PeakContextHuman.Rnw
e22d7dbd060325161369d0e7e2e58809 *Scripts/PeakContextMouse.Rnw
bf012dbfcfee1aee1d476b131ff815b6 *Scripts/PeakCutoff.Rnw
027314cba8b874dc1d337a24048faf6a *Scripts/PeakModel.Rnw
10a39afb911fbcfd768ce3f473074e6e *Scripts/PeakReproducibility.Rnw
fc5f8df77609407d4dde159745ead9de *Scripts/PeaksByCopyNumber.Rnw
727166198a38cc8d25d326ca1eb40ec4 *Scripts/RateComparison.Rnw
aa70f1fa6f051112a2d02f42a95ce676 *Scripts/ReadAndSave54.R
ae7894a5b856dbaf4eb47efb18a37aaa *Scripts/ReadAndSaveCTCF.R
42e617263ffdc34e7ca72e2812520574 *Scripts/ReadAndSaveData.R
05caa000363574dcdbb4f33f43adc444 *Scripts/ReadAndSaveSimulation.R
0499bfe7ca2da5b930300dcea653fe3f *Scripts/SolexaSim.R
8418412635db910c56247de35566e5e9 *Scripts/abc.rda
b2b3308f0d60517c9e1d4d10aadc2ac9 *Scripts/antibody_comparison.R
ed4f51f8bcebaf4eeeb5c96ff4879c24 *Scripts/dePeaks.R
f7d49434a22023a99f7926fb6ee4f6e6 *Scripts/diffpeak.R
3ed9c551e8103a45b28b99eb559a484f *Scripts/diffpeaks.R
837228bc953727b032e40cbb6205a57d *Scripts/estimate_fragment_size.R
a06c7dabaad7ed64c565327650ca8cc9 *Scripts/fibroblasts.R
e72faaaedf165cab4014877a5c052884 *Scripts/getIsochores.R
3783000fdd3bf5e218849c3c4f13125f *Scripts/hmm.R
4b7c58b557ccce7b42ccc011b4d82021 *Scripts/human-islands.R
eeaf2ff4f62313033a80205dee813c86 *Scripts/isochore_comparison.R
f7328263dd15bd2151f28b1608cbbb49 *Scripts/isochores.mm9.rda
c7a667f5161cfde7f01daaa6d4caa464 *Scripts/negbinomial.R
a2ca467d2433f490d5cc6b1343690bb2 *Scripts/peakContext.R
786298cc4d4d8d7fba7ac8a3cdf3bdc5 *Scripts/peak_mle.R
e14f736999fe4d70f015fb4d4e39ba68 *Scripts/poisson.R
2d307d1468ebac6eea2f052f07bb4e30 *Scripts/simulate.R
bf32b8fbb5ae9f6aca83195bf78deae3 *Scripts/singletons.Rnw
41c6ab6fd784ed7445193929413afc97 *Scripts/solexa54.R
601e7f10d36f8c8da2d856f410aef879 *data/cstest.rda
ecf5bb4234b028fcab1fdb3c88b52ab0 *data/datalist
2427feeb636619e50d1023c80511d998 *doc/Workflow.R
219e82a7af0f2e1d04933c8b87e6166a *doc/Workflow.Rnw
71e827241b042f73f7b3b12f1a5fdc17 *doc/Workflow.pdf
32207b13a2f38060064f4cc8b0c8c442 *doc/index.html
7d4b71aca2e2ed20799a1338b54b87bb *help/AnIndex
d50efc991d34a9815b2625f217e7e6e7 *help/aliases.rds
bbe75cb3709f2b60899753906cf56b9d *help/chipseq.rdb
e35bf9ab8532f8d1aac332393fe310a4 *help/chipseq.rdx
6e9119e6c1af160eb501d4a379fdb7e6 *help/paths.rds
908d6f73062ea4405d2a8e8bc901c092 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7c0cc2b0cb44d294daf0f088b05a8ec2 *html/chipseqFilter.html
23985c4fa73e999a349253514c436731 *html/coverageplot.html
2f3ccb477448b13a72c0398f82d64352 *html/cstest.html
e31ad0442feb5571d541383ff7ad06a1 *html/diffPeakSummary.html
695bb603f93c69b94433e74fb164b1e6 *html/estimate.mean.fraglen.html
27ad8a73dc7cc9fc165e788b080c5565 *html/islandDepthPlot.html
5ea0816f6e57a1b6f1deed87de8230a7 *html/laneSubsample.html
9545baaf9e86942e4d297fbdb8bacdd0 *html/peakCutoff.html
40814935fc368044c64e4756deadfb30 *html/peakSummary-methods.html
54b6bf8fd3abbce3f79fc23869312dff *html/subsetSummary.html
f09d64eff5022c6fd97a1b7d1e00b340 *libs/i386/chipseq.dll
29c91c2b502766065b1c22efa7d48cc6 *libs/x64/chipseq.dll
