af228647a23b94d80bcd44fd243090e8 *DESCRIPTION
4b39c6f6c5c1cae40851f9bd7aad3d2a *INDEX
15861382f241748a315fd92e2820401d *Meta/Rd.rds
24fc69627c57632215fc913a7e7f1fb7 *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
c908a14bff0a8830356543791b881b27 *Meta/hsearch.rds
ffc1bdd15ab3b311d3d91e98b8d8d64c *Meta/links.rds
96160ec2a508412f8a748f06cae44625 *Meta/nsInfo.rds
c3848481c67c500b7c9c8f11a77d7a5b *Meta/package.rds
e9d07d9f9dbbd5ed216dadc78b9c9d21 *Meta/vignette.rds
4a65cdeafd7d8d2c863c9912b6380945 *NAMESPACE
f77e5430569c792149b7596240caa1e5 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/biscuiteer
3e896ce85fc099ff3caeca2719769bf5 *R/biscuiteer.rdb
b4626219ca40298f3ed98db6a276577f *R/biscuiteer.rdx
0adde9c30a80413435c5883fdbaf18ea *data/ENSR_subset.hg19.rda
b1355be5ec9d87afa92c617a211ceb9e *data/ENSR_subset.hg38.rda
d3b3899ba06144339ee83ba8fe4ba858 *data/GRCh37.chromArm.rda
ea35f87b69e6b1eee240462d3de1e647 *data/GRCh38.chromArm.rda
e9432085dba6233b4a53865985598fb2 *data/H9state23unmeth.hg19.rda
f942e9a779658c0d196a80bf2eb49a33 *data/H9state23unmeth.hg38.rda
bdbeb2f653476bd1c3812add4b1cfc0e *data/HMM_CpG_islands.hg19.rda
515534a7e5eb261dd9fd0e333d61b33c *data/HMM_CpG_islands.hg38.rda
3279b939a7b53ad38387447c4c9d2313 *data/clocks.rda
82f9894660885e9d11cba4aed146b513 *data/datalist
6869680f11325e482806c86b47151c77 *data/hg19.chromArm.rda
247bc9d7284208061b82dddc841ae191 *data/hg38.chromArm.rda
b6e4e4db1ef5838a88d1510221c32777 *data/seqinfo.hg19.rda
cd9fd1521718f84dc72b8ce64b9a5d7f *data/seqinfo.hg38.rda
d1226704e76cb1fcc92b52443320b337 *data/seqinfo.mm10.rda
e61cf45e8cf000c4535908bde3406841 *doc/biscuiteer.R
f98e9c421f04bf730047078e3e80f71f *doc/biscuiteer.Rmd
249ce0f3e5e1c171b8a54883eef66134 *doc/biscuiteer.html
cdc7f49c14754d18b93edd50d3ed1529 *doc/biscuiteer.md
fd59ea6d8b1580f17f285940a639daa9 *doc/index.html
31048ae3d0a6b7953760336e638b86b7 *extdata/MCF7_Cunha_chr11p15.bed.gz
1971254c2e0f420e04d8119174949b1e *extdata/MCF7_Cunha_chr11p15.bed.gz.tbi
57b14e8560ff1cde06b7578b688f20af *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz
d6ff9139c2cd7728430fa6d969fe124a *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz.tbi
61309ab54074516a5b2973f632687741 *extdata/MCF7_Cunha_header_only.vcf.gz
d80cf4090040c37259bf284f3249834b *extdata/MCF7_Cunha_header_only.vcf.gz.tbi
cfb4a86e6b86ced7a5bce1e63ac54a11 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz
7b2b4a379f80df3f17e729eb04075171 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz.tbi
45755b3aa6c2f33303c0aac5abc2326c *help/AnIndex
0f7e40e6e06398f71d756cac2ee11d82 *help/aliases.rds
9dc85cb3bc68dfe9ed68584874d2346c *help/biscuiteer.rdb
511f70b89ff75ab6ddfecbaec5ea7f2a *help/biscuiteer.rdx
26c64cf092defcce59da2afc2269c4cd *help/paths.rds
88d07f9c5091c4b93d8becd752c8c6c4 *html/00Index.html
67863b973395a0f7f87f20ea8d050efc *html/CpGindex.html
5120496149f2d666aab3e2257187d152 *html/ENSR_subset.hg19.html
2e4c385842ba5caddbe3e3ed6e35153f *html/ENSR_subset.hg38.html
338544049d5889512165476feafc2308 *html/GRCh37.chromArm.html
075a6ab9cf4df9da2796162459275090 *html/GRCh38.chromArm.html
99939a986cc1aae2b804e12d810ea720 *html/H9state23unmeth.hg19.html
038bd51454b19ebc01c4e985cdd5a9fb *html/H9state23unmeth.hg38.html
fa0cd2f44b921072ebe6466f4f656236 *html/HMM_CpG_islands.hg19.html
f060e6288f1d7509c416db13e02b3e5b *html/HMM_CpG_islands.hg38.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
b63a5646db7e6a7147f3d353b79cc1d1 *html/RRBSeq.html
4aaa3d902d5c79a5fa85321b4ddee32d *html/WGBSage.html
a43671ec20ae8dc8b60587a53d0609f5 *html/WGBSeq.html
c345fa93fac317c73262ddf0f0a038a8 *html/atRegions.html
d8e8737325439ae4be46b57f289cad5d *html/binCoverage.html
d7a5797f6e42aa21ee96acb745c831f1 *html/biscuitMetadata.html
5ddcde9b8bc8217c431da2ec134a4d13 *html/biscuiteer-methods.html
4761b60f0faf6d8a166ae78f132a87e7 *html/biscuiteer-package.html
16db5953f93672724de2a9bbd21082db *html/byChromArm.html
495b04a008f233357627492d6c77e581 *html/byExtremality.html
d9d35f7cf45d60a18c3b92eb0ff10dc2 *html/checkBiscuitBED.html
40f649b7a0e1f08ac78b6e7df1fdd308 *html/clocks.html
f73a7b80ecd60e9e9a1f05b12096a7f4 *html/condenseSampleNames.html
14eea4bae5d37ca79dfe557ae5b839ab *html/extremality.html
0ff832460a443cfe77cde7a8262ae7e2 *html/fexpit.html
c14330282568896c8a495a6c2aed7507 *html/filterLoci.html
c73bc40f05a664a89b35762458602147 *html/fixAge.html
131156572a82ad24a24bdcfc98f97a66 *html/fixNAs.html
2c5f97c1e5ace941f6de9a237f3baff0 *html/flogit.html
182e345be7aee61eb4df4bc059926e7d *html/getClock.html
463ab336361b2cbd9cc67ceff6a99a07 *html/getLogitFracMeth.html
b5f7c85ef7836ce24497d9ec512904cd *html/grToSeg.html
92a02cbde715911850b9933c96e08c24 *html/hg19.chromArm.html
fa9a01e96d1935d1fe73863f96123b32 *html/hg38.chromArm.html
ec232a74d5915c1bf37f8fd42f22789d *html/makeBSseq.html
565422d31e80f9d79aadc3a61306682c *html/readBiscuit.html
2329a9c1c8760c6907879a9209b8848e *html/segToGr.html
ecb78a3d71becfbae7ba1bbf26e9c5ae *html/seqinfo.hg19.html
5609444d14f4fb45768b927471ad6cb1 *html/seqinfo.hg38.html
ae44fb7b1c6bc175b838299674f1a58a *html/seqinfo.mm10.html
d0e4726893fc7dfbac0bb1fc9488485a *html/simplifySampleNames.html
fe693e1ee250601719d96762cf76963e *html/summarizeBsSeqOver.html
fa3e5063cd260c429c2c558a9b2318ed *html/unionize.html
39c1310b90fe5a0de192833a7df9f3d7 *scripts/clocks.R
73a881932be92dd2a1594cbef6303e4a *scripts/extdataDescription.md
62b582af8bfe316884406f04f44d7606 *scripts/genShuffledMCF7CunhaBed.py
