# Generated by roxygen2: do not edit by hand

export(convertSEPair)
export(convertSESubsetGenes)
export(plotClusters)
export(plotLitre)
export(plotLitreApp)
export(plotPCP)
export(plotPCPApp)
export(plotSM)
export(plotSMApp)
export(plotVolcano)
export(plotVolcanoApp)
importFrom(DelayedArray,DelayedArray)
importFrom(GGally,ggpairs)
importFrom(GGally,wrap)
importFrom(Hmisc,cut2)
importFrom(RColorBrewer,brewer.pal)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,rowData)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,one_of)
importFrom(dplyr,select)
importFrom(dplyr,starts_with)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_hex)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_gray)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,dev.off)
importFrom(grDevices,jpeg)
importFrom(grDevices,rainbow)
importFrom(graphics,plot)
importFrom(grid,grid.draw)
importFrom(gridExtra,arrangeGrob)
importFrom(hexbin,hcell2xy)
importFrom(hexbin,hexbin)
importFrom(htmlwidgets,onRender)
importFrom(methods,is)
importFrom(plotly,config)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(plyr,mapvalues)
importFrom(reshape,melt)
importFrom(shiny,HTML)
importFrom(shiny,actionButton)
importFrom(shiny,basicPage)
importFrom(shiny,bootstrapPage)
importFrom(shiny,br)
importFrom(shiny,div)
importFrom(shiny,em)
importFrom(shiny,fluidPage)
importFrom(shiny,img)
importFrom(shiny,numericInput)
importFrom(shiny,observeEvent)
importFrom(shiny,p)
importFrom(shiny,reactive)
importFrom(shiny,reactiveValues)
importFrom(shiny,renderPrint)
importFrom(shiny,req)
importFrom(shiny,selectInput)
importFrom(shiny,selectizeInput)
importFrom(shiny,shinyApp)
importFrom(shiny,shinyServer)
importFrom(shiny,shinyUI)
importFrom(shiny,sliderInput)
importFrom(shiny,strong)
importFrom(shiny,verbatimTextOutput)
importFrom(shinycssloaders,withSpinner)
importFrom(shinydashboard,box)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,menuItem)
importFrom(shinydashboard,sidebarMenu)
importFrom(shinydashboard,tabItem)
importFrom(shinydashboard,tabItems)
importFrom(stats,coef)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,predict)
importFrom(stats,qt)
importFrom(stats,setNames)
importFrom(stringr,str_replace)
importFrom(stringr,str_trim)
importFrom(tidyr,crossing)
importFrom(tidyr,gather)
importFrom(utils,combn)
importFrom(utils,str)
importFrom(utils,write.table)
