e04a04da596bd025e6c0230ed1fcdb6f *CITATION
6b8b62ce39bc6f8b8fdab831eca63b1b *DESCRIPTION
b19f7d4bea17c91b52ef98e2ac1970cd *INDEX
292fa10ae2e5b9e1eac3484ab6beedf1 *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
a19321abcbe0d0bc64f1d134515461e9 *Meta/hsearch.rds
d15ccc88556b8d585c3339efde92cdde *Meta/links.rds
dac0fe7a446e3c38bc04e1a8e693cf89 *Meta/nsInfo.rds
4b5ea29b9c308faea57d6c0b76a8c42b *Meta/package.rds
29cc19075cc253d329a60a44aa8246cc *Meta/vignette.rds
9e3004981ec573ee92a98c5f58611f29 *NAMESPACE
9ce446f789154a53242d8a2a2d8210b3 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/amplican
4d45d6a3e43cf4993530cfe6d1e98988 *R/amplican.rdb
23f489cb21808ec874bf9e09ba6f86f1 *R/amplican.rdx
b8ccc81f31c0559fa085bd79613e7357 *TODO
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6a8c711c33b8b311012ecff5fbeea651 *doc/amplicanFAQ.html
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388a94820af12b759caae8887423ea05 *doc/amplicanOverview.Rmd
68f79610eb6315f8c5ae71a00b09f60e *doc/amplicanOverview.html
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3fd3b92ac65ce84ec1cdcd21533a77c8 *doc/example_amplicon_report.Rmd
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52daaea1992b153aba0c9fd4c81cd2cc *doc/example_barcode_report.R
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bc9dfdb39d0be741fa6d64fc19a1e066 *doc/example_group_report.R
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4645566562739b193feef2a2c3bfa650 *doc/example_group_report.html
2c080a8753aca735b1a73ac0657b5d1b *doc/example_guide_report.R
7ad6c8cd9ad2abde9717c5f055a542fe *doc/example_guide_report.Rmd
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33bbcc8c3914f5b1ce390781ac9289b2 *doc/example_id_report.R
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41b3eea366fbac708757c72576ca3f24 *doc/example_id_report.html
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9d80d62d383f0453a384f26dfc80a430 *doc/example_index.html
bb0ef90f5f138f7af59e0ed54c62d0e6 *doc/index.html
76d9b86f9c262152ff6206ed59d5bfc9 *extdata/R1_001.fastq
f031f958c70a89dd14ec295d2116f175 *extdata/R1_002.fastq
d07236649c07ec61d4eec9914cc11833 *extdata/R2_001.fastq
ce8dccc37a47aeaf8db8bdb912e601a9 *extdata/R2_002.fastq
401443ce562868c24a7d23e749ab639a *extdata/config.csv
edea2c9bbd0920fac8d68f4866b378f3 *extdata/results/RunParameters.txt
1ef5fa1fce004bc7cb4524a62450982b *extdata/results/alignments/AlignmentsExperimentSet.rds
b8610934119f48e41b492ba0cb13141d *extdata/results/alignments/alignments.txt
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6658a89f707a57d30aa48a43e724a8e0 *extdata/results/alignments/unassigned_reads.csv
a53bf79033d2112bdabbe3d43c226163 *extdata/results/barcode_reads_filters.csv
aa52b7df59333c633a3256846a6590d7 *extdata/results/config_summary.csv
f606ab59f92ae90c229672a78a7f9846 *help/AnIndex
988e66d43b9f2c47ac1e3b3a14ed89f8 *help/aliases.rds
14be3a2b349528f802d7249105dd676b *help/amplican.rdb
50b08f84fc96656960d2553b86930c4e *help/amplican.rdx
492637eeafc8b39e22b32f604a23d788 *help/paths.rds
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8f39b2da1ec34805e6843cfdc650011a *html/AlignmentsExperimentSet-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
348a5f2ffd5a45a94f1619c92c576cdb *html/alphabetQuality.html
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4e256ac17a2cd5904f29820965514b1e *html/amplicanAlign.html
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3a79328530b78637a1c37143616ad0a2 *html/amplicanFilter.html
cc859ed4d8c994da5c8a6c79116d567a *html/amplicanMap.html
49de33e14948e5934af5172f108075bf *html/amplicanNormalize.html
c8ea6026a26b27a1fce2c937739afbd0 *html/amplicanOverlap.html
0d35a1965c8e34a75d26e1b0e8300097 *html/amplicanPipeline.html
29f73d493b13bd93d2d14a3715abf3f7 *html/amplicanPipelineConservative.html
0b659268c1ee303b24178200b97fcd95 *html/amplicanReport.html
43dc774b7472e41381fe6d46c7d7fa14 *html/amplicanSummarize.html
bc77c5db767870c4d9010025ea14d296 *html/amplican_print_reads.html
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277d83d9d3f329942223c41654bb1d4e *html/barcodeData.html
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86a7eefa386bb90b6d28694989776130 *html/checkFileWriteAccess.html
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67efa6b37302fefd44b7c4a5f1c459e0 *html/checkTarget.html
1aa6c820acd47b734c59fd84569f2e18 *html/cigarsToEvents.html
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9318578955948a88abedc5d2fff137e7 *html/cumsumw.html
85cf005efa4ff8fa42049c5bee5e1e8f *html/decode.html
84cfd13307d75fba7fe64fd1a0f6cdf5 *html/defGR.html
df6e6ae096be29bd2c17c1c6eff2622e *html/experimentData-set.html
7c57314e054ca826bf952afbeb7727b2 *html/experimentData.html
c5b92aa32dec7dfe1735697428a42c33 *html/extractEvents.html
e4e5b69045bac97198767a0735693e75 *html/findEOP.html
5bc292fb65077956bc9aea3ed65b1171 *html/findLQR.html
cd35c124df0dfa5abd79df66238d543b *html/findPD.html
1ce25a28b928a613851973ec9e2597fe *html/flipRanges.html
13d059379bc166d6928353912c8e88ea *html/fwdReads-set.html
c7cff5d50973c89d5e7bea9866e467c3 *html/fwdReads.html
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002dac7f06b413b32abe65abd92c2b13 *html/fwdReadsType.html
a040c53b4b2a9dc6fc5bc8e6f1a1e6d9 *html/geom_bezier.html
3b14e69c2797ea8e5f917341a6c5400d *html/getEventInfo.html
07484bc2dba39db4fa273968dd60beff *html/getEvents.html
6425a3313c91a9fd0913ba317d452ede *html/get_amplicon.html
ea403281046fdd88265fceba55edbe9d *html/get_left_primer.html
e5596135f37468e0b8c9fd12e8d4dfee *html/get_right_primer.html
47f3c01f79a25fe5adc7898d5a172828 *html/goodAvgQuality.html
6a2b65177a3642b5116287330d54717c *html/goodBaseQuality.html
b5803dfb9b744e9c75f26d0ed69d2242 *html/lookupAlignment.html
c590528b923ba27ae53bd0985b00e317 *html/makeAlignment.html
dd31cc02d6b50019d4dc9896e6d0223f *html/metaplot_deletions.html
2adc5b450f980c92fade736c6dfb204d *html/metaplot_insertions.html
0aa8b8392b9807c1bdb8e003bde70c7b *html/metaplot_mismatches.html
ef211ad7d117d41590cc3459f436ac55 *html/pairToEvents.html
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6162cc9172638de669bf509074a35694 *html/plot_cuts.html
3d29f55db722ba43c9f9bdf393b9246f *html/plot_deletions.html
4b9d47e5effeffc42b79c62282aef14d *html/plot_height.html
2de06db4e9411a9f49f990c9eb2f52f1 *html/plot_heterogeneity.html
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9f0c42883763b53accfbd00c502f0cfa *html/plot_mismatches.html
d9e5a5768924e2bb071fcdaee2ba474d *html/plot_variants.html
8d653a985820813c44a3d23622ba7b6b *html/readCounts-set.html
e7486309ad66d4fc946a5c6369c0b722 *html/readCounts.html
bce39d2fa6276446ade5db59e05101f4 *html/revComp.html
962cb65e835b4f9a7f8784d18144fa02 *html/rveReads-set.html
446e540a523d12b5aa3442fc1b3a66ef *html/rveReads.html
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44899e9e36472d80c360a997883bc5c2 *html/rveReadsType.html
9b22e16d7a71ccbcc104a17ce11e8d7a *html/unassignedCount.html
8858b7cc8169a5390458fb691458771c *html/unassignedData-set.html
9de2537ddd17fd129c70ac94616092e4 *html/unassignedData.html
e035637b46d74da3abf1109fe618195f *html/upperGroups.html
0ff8d8e70e1701adf34ba084d9ddfb55 *html/writeAlignments.html
21322f922ef892078f4ba9e4ad8c7a0d *libs/i386/amplican.dll
180019d9ac5a23b52e6a4d0584a3c497 *libs/x64/amplican.dll
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655218255ebe76ff75d364fa460699ff *rmarkdown/templates/amplicon_report/template.yaml
d2ea049adaa133678c890c4959ae476e *rmarkdown/templates/barcode_report/skeleton/skeleton.Rmd
91dcd8aab8a92b0b874855a7fef5c4d8 *rmarkdown/templates/barcode_report/template.yaml
b975d6495ac916576049258ba1f8728d *rmarkdown/templates/group_report/skeleton/skeleton.Rmd
d09ec79227254463515c1460602e23ea *rmarkdown/templates/group_report/template.yaml
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4f2ab0b3739252a8431f9d2ef5d04276 *rmarkdown/templates/guide_report/template.yaml
31a40ae55946b82ed19a6fea8156fbdf *rmarkdown/templates/id_report/skeleton/skeleton.Rmd
d0f78fe1028bf29d03ad956315e83e92 *rmarkdown/templates/id_report/template.yaml
13afd0f9b36a7504ab2e43a60ba4aa5a *rmarkdown/templates/index_report/skeleton/skeleton.Rmd
08df645e81995db2d228de09f69a0cea *rmarkdown/templates/index_report/template.yaml
60b0f0e1f1870a8c9e5ca15743d862ed *test_data/test_aln.csv
08c09237fc07e51e8e66072379825ace *test_data/test_cfg.csv
