aberrantExonUsage       Calculations of relative aberrant exon usage
                        amounts per sample (based on FIRMA scores)
clusterPlot             clusterPlot
correlation             Calculates the correlation between sample-wise
                        amounts of aberrant exon usage and splicing
                        factor expression levels
correlationPlot         correlationPlot
firmaAnalysis           Read CEL files and perform FIRMA analysis
geneAnnotation          geneAnnotation
geneSetCorrelation      Correlation between aberrant exon usage and
                        expression levels for a number of gene sets.
geneSets                geneSets
posNegCorrPlot          posNegCorrPlot
probesetPermutations    Permutations of the samples at each probeset
readGeneSummaries       Read gene-level expression summaries
sampleSetFirmaScores    sampleSetFirmaScores
sampleSetGeneSummaries
                        sampleSetGeneSummaries
scatterPlot             Scatterplot showing relative amounts of
                        aberrant exon usage per sample
splicingFactors         A list of 280 splicing factor genes
