c25612a7003bf5ba14ceb945ea03aa44 *DESCRIPTION
27b80f7f7185212dc706b536da0f13b5 *INDEX
4662b247567cbce543637ed7a66e8bb0 *Meta/Rd.rds
f51f28e08b4fc215e2f6955f2c2ae531 *Meta/features.rds
d653fdcf8e9da6ba8a1e70445889e5ba *Meta/hsearch.rds
1991d9615d7534a6fe296672ad1c7cb8 *Meta/links.rds
a8b89446eb893bc758fd08e6330ec4fc *Meta/nsInfo.rds
953c11f979153cad58d23bd3c776fce7 *Meta/package.rds
1c6616991e673778dc504d007530649f *Meta/vignette.rds
6feba8077718b0c668857b5d7b860d6d *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/SplicingGraphs
3791e77b63b54dcb071ce9a4f01b72e6 *R/SplicingGraphs.rdb
af75b69bf44c43fdfbdd71d54c0ac0cb *R/SplicingGraphs.rdx
8bf11584940c3bd7af494eb933047d44 *doc/SplicingGraphs.R
8e772f322a2f2ae586804ae50e60e6bf *doc/SplicingGraphs.Rnw
8b00662309736443f011a0de64f96909 *doc/SplicingGraphs.pdf
88377b5fd65dbaaf32cf912ac99e20ac *doc/index.html
e927d6e86c26ef2f567f538e4d02c6bb *extdata/ASpatterns.txt
b10a130d5d8e8aa34a67c0676e678e42 *extdata/TSPCsg.rda
2496dff4893d460511d871a0c485aa6b *extdata/toy_genes.gff3
648ca39416010bda3340da48c26912ef *extdata/toy_overlaps.txt
62072a44e72d0ea965e19a12820417ca *extdata/toy_reads.sam
ff355f3e1adcaa01590064536ff5380f *help/AnIndex
7b33051a3133f3cf54909cd71b284904 *help/SplicingGraphs.rdb
4ec878a83cdf0b7903cc8aefea0e8c1b *help/SplicingGraphs.rdx
587b3d35528a40d910f96ae74e99468a *help/aliases.rds
d7ac34a30835ce22d9ecf8c1e90b316e *help/paths.rds
922a991a49b2649580df6215923ecb55 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
93a93af2d3791c4680da31eb73b10039 *html/SplicingGraphs-class.html
65f4ca6e32576d6befdb89bc74c13694 *html/SplicingGraphs-package.html
4c876f96f1b50d8f8d970c1014e4ca20 *html/TSPCsg.html
425c016018f48b996dbf5915db921e1e *html/assignReads.html
585aa0fe159f8bd23b2d831c6286856d *html/bubbles-methods.html
850bef4398828bc74ffb44f664d6d3d4 *html/countReads-methods.html
e6d5f6819b0dab7e3a0ee3c7c2bf8fea *html/plotTranscripts-methods.html
3c178fefca4186004094dfd7ba927049 *html/rsgedgesByGene-methods.html
ebaa74541b993dbdd9b876b7ecc4b210 *html/sgedges-methods.html
c00624dae5fa4ddf7a3104bbdf935061 *html/sgedgesByGene-methods.html
2d8e8e52c8dbcfc215cce228fecacf7e *html/sgraph-methods.html
43703efb34f80a83ecff2e99dbc402f0 *html/toy_data.html
458b32c71726eba8a2e426bbd779fa8a *html/txpath-methods.html
f22485f979fcbadb1e6d5c1498f2de11 *scripts/TSPC-utils.R
0ee9097358b000f70562de18bc67a066 *scripts/create-vignette-plots.R
44830c9a0141fe8277304d7419d7a20d *scripts/makeTSPCsg.R
1bba688669d20686db16f84dc56a8e2f *unitTests/test_countReads-methods.R
