# Generated by roxygen2: do not edit by hand

S3method(print,EG)
S3method(print,GS)
S3method(print,aOnto)
S3method(print,cTarget)
S3method(print,dTarget)
S3method(print,eGSEA)
S3method(print,eTarget)
S3method(print,eTerm)
S3method(print,iSubg)
S3method(print,ls_eTerm)
S3method(print,pNode)
S3method(print,pPerf)
S3method(print,sGS)
S3method(print,sTarget)
export(EG)
export(GS)
export(aOnto)
export(cTarget)
export(dTarget)
export(eGSEA)
export(eTarget)
export(eTerm)
export(iSubg)
export(ls_eTerm)
export(pNode)
export(pPerf)
export(sGS)
export(sTarget)
export(xAggregate)
export(xCheckParallel)
export(xCircos)
export(xColormap)
export(xCombineNet)
export(xContour)
export(xCorrelation)
export(xDAGanno)
export(xDefineEQTL)
export(xDefineHIC)
export(xDefineNet)
export(xDefineOntology)
export(xEnrichForest)
export(xEnrichViewer)
export(xEnricher)
export(xEnricherGenes)
export(xGGnetwork)
export(xGR)
export(xGR2nGenes)
export(xGR2xGeneScores)
export(xGR2xGenes)
export(xGRscores)
export(xGRsort)
export(xGSEAbarplot)
export(xGSEAconciser)
export(xGSEAdotplot)
export(xGSsimulator)
export(xGeneID2Symbol)
export(xHeatmap)
export(xLiftOver)
export(xMEabf)
export(xMLcaret)
export(xMLcompare)
export(xMLdensity)
export(xMLdotplot)
export(xMLfeatureplot)
export(xMLglmnet)
export(xMLparameters)
export(xMLrandomforest)
export(xMLrename)
export(xMLzoom)
export(xPieplot)
export(xPier)
export(xPierABF)
export(xPierABFheatmap)
export(xPierAnno)
export(xPierCor)
export(xPierCross)
export(xPierEvidence)
export(xPierGRs)
export(xPierGSEA)
export(xPierGenes)
export(xPierMRS)
export(xPierManhattan)
export(xPierMatrix)
export(xPierPathways)
export(xPierROCR)
export(xPierSNPs)
export(xPierSNPsAdv)
export(xPierSNPsAdvABF)
export(xPierSubnet)
export(xPierTrack)
export(xPierTrackAdv)
export(xPredictCompare)
export(xPredictROCR)
export(xRDataLoader)
export(xRWR)
export(xSM2DF)
export(xSNP2cGenes)
export(xSNP2eGenes)
export(xSNP2nGenes)
export(xSNPlocations)
export(xSNPscores)
export(xSparseMatrix)
export(xSubneterGenes)
export(xSymbol2GeneID)
export(xVisEvidence)
export(xVisEvidenceAdv)
export(xVisKernels)
export(xVisNet)
import(RCircos)
import(dnet)
import(ggplot2)
import(graphics)
import(igraph)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,unlist)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,as.data.frame)
importFrom(GenomicRanges,distance)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,split)
importFrom(GenomicRanges,start)
importFrom(Gviz,AnnotationTrack)
importFrom(Gviz,DataTrack)
importFrom(Gviz,GenomeAxisTrack)
importFrom(Gviz,IdeogramTrack)
importFrom(Gviz,plotTracks)
importFrom(IRanges,IRanges)
importFrom(IRanges,pintersect)
importFrom(IRanges,reduce)
importFrom(IRanges,width)
importFrom(MASS,fitdistr)
importFrom(Matrix,Diagonal)
importFrom(Matrix,Matrix)
importFrom(Matrix,colSums)
importFrom(Matrix,rowSums)
importFrom(Matrix,summary)
importFrom(Matrix,t)
importFrom(ROCR,performance)
importFrom(ROCR,plot)
importFrom(ROCR,prediction)
importFrom(caret,createFolds)
importFrom(caret,createMultiFolds)
importFrom(caret,featurePlot)
importFrom(caret,getModelInfo)
importFrom(caret,train)
importFrom(caret,trainControl)
importFrom(caret,twoClassSummary)
importFrom(caret,varImp)
importFrom(dplyr,arrange)
importFrom(dplyr,arrange_all)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(dplyr,semi_join)
importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(dplyr,transmute)
importFrom(ggbio,autoplot)
importFrom(ggnetwork,geom_edges)
importFrom(ggnetwork,geom_nodes)
importFrom(ggnetwork,ggnetwork)
importFrom(ggrepel,GeomTextRepel)
importFrom(ggrepel,geom_label_repel)
importFrom(ggrepel,geom_text_repel)
importFrom(glmnet,cv.glmnet)
importFrom(glmnet,predict.glmnet)
importFrom(grDevices,cm.colors)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.cur)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.off)
importFrom(grDevices,extendrange)
importFrom(grDevices,hcl)
importFrom(grDevices,jpeg)
importFrom(grDevices,pdf)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,contour)
importFrom(graphics,curve)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,text)
importFrom(lattice,contourplot)
importFrom(lattice,levelplot)
importFrom(lattice,xyplot)
importFrom(methods,is)
importFrom(osfr,osf_download)
importFrom(osfr,osf_ls_files)
importFrom(osfr,osf_retrieve_node)
importFrom(plot3D,persp3D)
importFrom(plot3D,scatter3D)
importFrom(plot3D,text3D)
importFrom(purrr,map_chr)
importFrom(randomForest,importance)
importFrom(randomForest,randomForest)
importFrom(randomForest,tuneRF)
importFrom(readr,read_delim)
importFrom(readr,write_delim)
importFrom(scales,log_trans)
importFrom(scales,math_format)
importFrom(scales,pvalue)
importFrom(scales,sqrt_trans)
importFrom(scales,trans_breaks)
importFrom(scales,trans_format)
importFrom(stats,approx)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,ecdf)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,order.dendrogram)
importFrom(stats,p.adjust)
importFrom(stats,pexp)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(supraHex,sDistance)
importFrom(supraHex,visColormap)
importFrom(supraHex,visHeatmapAdv)
importFrom(supraHex,visTreeBootstrap)
importFrom(tibble,as_tibble)
importFrom(tibble,enframe)
importFrom(tibble,tibble)
